Scaffold B570J40625_100015023

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100015023
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13591
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Jannaschia → Jannaschia formosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F039992	Metagenome / Metatranscriptome	162	N
F055684	Metagenome / Metatranscriptome	138	N
F081071	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001502311	F003112	N/A	MIKPLAIWLTNLSLRFLMTQKEYACFKEALRFAGENNTVARETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES*
B570J40625_10001502312	F039992	GGAGG	VSLDEIHDLREKFGSMSERLARMEERQVTLIGMVERSLSSFGDLSNRVTSLEHLKTKMLLVAGSIGAIVSVVWDAIRSRLTNGG*
B570J40625_10001502316	F055684	AGGAG	MWITSTNNIIRQPQGIRIDDVNHPASIFWCWSKEQLAEIGIKPYHPASVPAGERVTGAYTEEVDGEVYERFNTEPIPQPEEPVNDPV*
B570J40625_10001502317	F000635	AGGAG	MTLSEIAQYAGEKVGKTDSETLTFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVSYDQSEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGIAQLDLYPRLETAGTISLRVVEKLKCLTRTNLIVDFPPTTQALDDELRLPHVHQVVLSLTHADALERERQYAKAQSVVQTANADLAAMANYELSQVGGIKQITPSSLGDLTTEEITAS*
B570J40625_10001502319	F081071	AGAAG	VTAVEFIEASGVPESTWPTFREWFNWHSERGLVGVAKDGDEVAGVAIARCIKGMEAPEPYEHDETGESVFVDLTVTSIDGKSNALSRKALKCLLSILWDRFGPRRRITFKRNGTYKEYDYYNFMRKALN*
B570J40625_1000150233	F004760	AGGAG	MPIYQYEDTRNGSVVELEKPVAERDSVPGYLKRFQVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSRHTPDSIKRAAAQRR*
B570J40625_1000150234	F010603	AGGAG	MASEFQRSPIKAKNKAVRIDGQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*