Scaffold B570J40625_100014797

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100014797
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13710
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y
F013887	Metagenome / Metatranscriptome	267	Y
F014134	Metagenome	265	N
F020681	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000147971	F014134	N/A	PYGDGSWIIGRRASRVAVCAAVASSLATYFATQPETEIDIQVG*
B570J40625_10001479710	F000468	AGG	MTVWTPDWKLSVAGVDYENITIADIAHQAGRDDIYTQPNPSYLQVEVVALSGQTLPFEINDGLTLQVKNSAGTFVSLFGGNITDVTVEVRNTGSVSNVISYTLLAMGSLVKLAKEIYTDNLSQDIDGDQIYTLLSSSLLNTWNEVPAAETWSGYSPTETWANAQNIGLGEIDAGLYTMSSRSANPDTIYNIASQIADSALGYMYEDNQGNIGYADADHRQTYLLANGYTELSANTALGSGLRTLTKSADIRNDIYINYGNNFNNEATATDTASIALYGYKGETINSAIHDGTDAQEIADRYISLRAYPYATFDSITFPITNSEIDNADRDALLGVFMGQPIHVTDLPFQINNGAFEGYVEGWRWSTRFNELFLTINLSPINFSQVAMRWNTVPVTEAWNTIGNTLTWEYATIVA*
B570J40625_10001479712	F013887	N/A	MYLSKAIRLLKPTAEFSINNDDYNTVKWDSLEGDAPTKKEIDDAIKQIKADEIAAAEAKATAKATAQAKLAALGLTVEDLQALGL*
B570J40625_10001479716	F002044	N/A	MANTRKPIKRKKINRRVVRQTPEPLSKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDDD*
B570J40625_10001479721	F002357	GGAGG	MAFNLEDYEDVATLNKWFISNYPMGRSDISVISHDAEKGYILVQATLWRDAKDTSPAVSNIAFGSRETYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMRKVESNPLFKEKLESRQNMYGKAGSKSAQIETILRDSFAADKKEPEPVAWSVGDVVAEIGAAIPNEPPACQHGHILKEGISKGGKPYRGYVCKAKACEPKWAKLTANGKWYFEGGE*
B570J40625_10001479722	F007469	AGGAGG	MGELQIIDGSGLTATFTDNGIKVEPSTVTCDLCNDDRLLHEGDLLRCYSCHAINRIPYHA
B570J40625_10001479723	F002162	AGGA	MPNYDYACDIEGTLIILELPMDHKIPQCQVCNTPLRRVYVAVPTIFKGTGWAGKDG*
B570J40625_10001479724	F020681	N/A	MVNFRCNFCSANTEFEWLDGYPEADGFRVYQCLKCCAVGTKNIAEATDTQEPVMRCTKCGSWMFADKECHTCALIMMK*