Scaffold B570J40625_100014503

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100014503
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13883
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.45%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F006181	Metagenome / Metatranscriptome	379	Y
F010317	Metagenome / Metatranscriptome	305	Y
F014974	Metagenome / Metatranscriptome	258	N
F019468	Metagenome / Metatranscriptome	229	N
F023343	Metagenome / Metatranscriptome	210	Y
F027823	Metagenome / Metatranscriptome	193	Y
F033400	Metagenome / Metatranscriptome	177	N
F041755	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000145032	F041755	N/A	MNITAAKMSGEEILAKYPILNTKWKYSHHKDELNGYNGYYYSNYKDWSTEVVTDPWYRNLINNGNPINTTESESIFFTSVEGNKVILVIYLKTYV*
B570J40625_10001450320	F023343	N/A	MSIKFNNVTTASFSVDNFKEEMAMMMFGRSFALAQAGKQCVICGKRAEFFSCDRATREFKISSMCEPCQNEVFETMSDEA*
B570J40625_10001450327	F033400	N/A	MNTADNIDNPFFTYKFDGKKVKTNKLVKNLNDDIALTQAINLFREQNNMTKARNPYSWWKYVLATITYFPKGVEYITVINILNDIAGVNVSKSTATLLARATAGAAPCVVRREYTVRLPDLAYNTKLTASFSRKTAKTKKGRPAFQFKFANTKDARDTILSSAPEMKPLFDLLDKKIVE*
B570J40625_10001450329	F014974	AGGAG	MIKLKDLLLENDDIFIPRRIEDRQTKYNNITQKEVNAIVDDFIAKRYNMSLTLSPKDIDDNGYEYGTLQYNGDFVVPDKLKHTPSNLLLNNSNVTKLPDNLTIGHYDILSVVGCYKLHQLPKGLKVKIVEAASSGVRVIPDDIECDTLNLDSAAYITELPLFKHYIETINLLSAVRFRILPAKFTCGTLNIIDTPVERIPDNVKIKYLKASNCKHLKSIGNNCEIDNLILINSMIESIPTDIKCSNYMNIRNTPFVNQLLKKQGTSEKVMEELKRSYPYVNDFGI*
B570J40625_1000145033	F027823	N/A	MNITAAKDVPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRDVYDGYDGYYYAYEKDIGTGIMFDPWLREFKVNMPISDDVYKTKMYHTTVESNPILLVLYKKKD*
B570J40625_1000145034	F010317	N/A	MKSIYIEKLAEVPGGLPARNMEEHIDGQYQGDSHSIPVEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSTVTEVGNNYFKTKNSVYSYKFL*
B570J40625_1000145035	F019468	N/A	MTIEKTYKLTIKDTAYFLTEEEVTKLYEQCRMVLNIKDLPTTNPVKPNIPYPYDTYPWYPNDTVTPYWTYCTINAGEDNCVKDTNWQPNLCNTVKSSNGINFLSDDMETIKENDKWRSSVQQALDKLSAKTNVTTSDGTTIR*
B570J40625_1000145036	F006181	N/A	MKNIVHVIYPDEAVHSFVMETDMVVSDILERVFAEWNHGSGMESELFIRSKKRSLSVNDIVCVNGKYYLCESFGWNEVTPQFVNELEEEVSNHPNRIQGAWFALNDVMYARKSNNKLELV
B570J40625_1000145037	F005293	N/A	MVNDSVPFVPTRDDLIGYISDTYKEINGFRPRPVWSELTYEQLDKWGRELAAEVVTYRKQEVVRNRIARGLRRAQQRAWVEKKRSYFTGSTFTIGNVVNF*