Scaffold B570J40625_100014384

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100014384
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13953
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (53.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F008814	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001438418	F008814	N/A	MANMTVLEEIIKEIGEELYQKWYNALAIEDRTEESSKAMSINAGETTFWVVQTFMNKFNAAAEELKDK*
B570J40625_10001438423	F002060	N/A	MNLDLNSIIIAISAAILSGMGTAIIAGLNENKREKNRKQEREQDHLKLEVKDLKIELYQIEKELTEWKDKYYNAIQELILIKSELEDALRNLSEMDSNEVLDR*
B570J40625_10001438426	F000473	N/A	MFIDKDKNHFKHGINQWTGEPNKPVFYTPEMSKAIRGITKPANNLQMDIVKYPEFLAIRLYEDNFVQFEGVKKEMVIDYVAKVKKLLESYGVRCELEGVPSERILR*
B570J40625_10001438430	F003582	AGTAG	MNTYRVKLEVEVEVEAFDENDALDYANDIFGVDDEIKNVKIINVKEK*