Scaffold B570J40625_100014000

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100014000
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14178
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (22.86%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F025742	Metagenome / Metatranscriptome	200	N
F027416	Metagenome	194	N
F039484	Metagenome	163	N
F042325	Metagenome	158	Y
F050949	Metagenome	144	N
F054034	Metagenome	140	N
F055733	Metagenome / Metatranscriptome	138	Y
F063369	Metagenome / Metatranscriptome	129	Y
F084236	Metagenome / Metatranscriptome	112	Y
F092047	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001400011	F042325	AGGA	MLKIENIQKIEGNKIHTPHAHWIVMGIEERKHDYIIKVRFEYGTTSGAKHPKYVNFKLLRYNEFSSTLGEWKMYNDQDNGYTTLTKGLLNFKMFVGMLGGQLHSFSN*
B570J40625_10001400012	F092047	N/A	MLTLKNFINIEGTEFQLSGGNKFLIGIAKDEGLHYTFGVFPLAVNGVAIIKDVIVYKLYKDILYGGDYYHGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGMIC*
B570J40625_10001400016	F025742	N/A	MLTIVNGDKLTGTELTGAGPDGPIAWHVSGMGGSLHHYIIYLTRDDNGWERKVTLDRYHSVNQTGIQYKLECGTEHMHLYRTSFLTIDIFKNYLEYFI*
B570J40625_10001400017	F039484	GAGG	MIIKNPDKLLKQWIPGTTGDIWFVDDVSVTMDSHGTAYIFRCTTEWPVKTSPNQQYYHSTRRIHKVVTLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMDKFILVLADLLPNTNSL*
B570J40625_10001400020	F055733	N/A	MTPIIYMVQTMVWIAHNDRKRADAISKQVTRFGEVNGLKYIVIENKED*
B570J40625_1000140003	F054034	GGA	MLTIRTFKKLEGLVLMDGLKVESIFEFNERYSIWLSDGTNIEIDREPHWKGSIVTYYKMYIAGGTSAMTEFIMIQTINTLDRMAKHLIYIHDKYKTK*
B570J40625_10001400034	F063369	N/A	MIITIAMVLLLIGIQILIKYTTNELDRPYRIINRSYYNVGKLERSWYVVQKRKNLLGFGYWAGVECEDSWDDTNTPSFDNFDEAYTLLQKCKQQKPLNGIKDEVELEWNKYPMKIN*
B570J40625_1000140004	F084236	GAG	MLTINNQYKIVAESFVVSKNGLNEHWTVDDITETPYVYDIRLLRKVGIFDTMERTIRVNREKNKLEMYSVQITAGGHIIDKDQIRVGNIQTADAMLNELKTIMEFI*
B570J40625_1000140005	F027416	N/A	MLTIENIHKLEGCKVAAACMVWKVLRIKELDYNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRAVERQDMVDVYNFLRLIKKEINRALC*
B570J40625_1000140007	F009960	N/A	MLILKNINKINGYALEVKGKGYYFKGFDNTTNDVATFALAGVSASNPLIRITLHKKGRMVFDNIQNKDCYVYGVGVDGLLFHYPKEKLNTPAEFRNTIEQILNGI*
B570J40625_1000140009	F050949	AGG	MLTIKNRGRLISDSFYDKMGMYWVVDKIIDDTNEYLILIENRKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKLKTYIPIETISDKRLLIKRMTEMIDNSYDI*