Scaffold B570J40625_100013723

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100013723
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14378
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F018352	Metagenome / Metatranscriptome	235	Y
F019826	Metagenome / Metatranscriptome	227	N
F020851	Metagenome / Metatranscriptome	221	Y
F047494	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001372310	F019826	N/A	MRLMRRSIRLAVSKEEKIANRITTLLSDFTLDLEAIGFYLAKGSPHIIYSRANEVLESMQYNKEVEQLDRGAYYGNGR*
B570J40625_10001372312	F006844	AGGAG	MARWEIEVIFEPTGDYMNFEYETDNEDEDGIFNEISNQLSIVPFLVEKNEEE*
B570J40625_10001372315	F007112	GAG	MHTLHYIAVEADNKQQAFDKVVVSLSREDGYSPADWSDWHVVGGGRWSTNANKESENNLMGGYNDDPTDVLGFSEDKEKFQETVNGIAKWKAEAVNRAIKTIDTDRFISDLVDYASEGGRPGNHFDGNKLMNIYAIKEAANMLMGSWIPDSGFYDLEENIAEVIYLKERLDKPEQASLQYLVPVDFHF*
B570J40625_10001372319	F004132	AGGA	MSEVMTQEQLSVPYNPNLLVTYKYVPEPYAAAAENTFMTDKVTDIEWQLHQSRSYADQLSQKRSDILWLEEQVTEWYNPNYTKEEVLQAIIEHFGFNPTKEIEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLSSYEYDADLTVDEVSLEDHY*
B570J40625_10001372320	F000684	AGG	MTLGGYTYQIGDLFTTSKTGITGRIVKFSPINSKTTRVSLKLANGAQRLAMVSTTK*
B570J40625_10001372326	F000808	AGGAG	MEYNYSLTTSYDGELINTLRVSDMLEAVSAWDKCVDFGDAKEYATYNLSDPLGKMYTKTFYRNGKVVIK*
B570J40625_10001372327	F018352	AGGA	MGKFKDTLMGILAHDECYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFKTKENA*
B570J40625_10001372329	F005348	AGG	MINSVMRFDCDECSGSGLIFWGDNLNYDVEKCECENFVLGDLF*
B570J40625_10001372334	F047494	AGGA	MNSLLNKVCKHTPNKNAISIVNDERFTFCENCEQNITSHYREDNDFMSYWTSWKVGK*
B570J40625_1000137235	F020851	N/A	MNKDLIDLAISMTEIDTGIILSLQERDDMIKRIMEKVNG*
B570J40625_1000137236	F011077	N/A	MENNLTWAEEETNLWKGWTYSLIKNRYYFNDIGYESLTDFWADEFLNQAYE*