Scaffold B570J40625_100013722

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100013722
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14378
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F005503	Metagenome / Metatranscriptome	398	Y
F016643	Metagenome	245	Y
F088885	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001372211	F016643	N/A	MTLFNPVWRVKIAGIQYTNYVLANLSTTSGRTNIYEQANAGYVSLELINLDQSNIDIEINDSVTIELQDSTATFVPIFGGTVVDLGIGIAASGVVGINQSVKITAVGALARLPKALTNGVLSQDFDGDQILTILTDLLINSWNEVPAALTWAAYDPTTQWQDAENTGLGEIDTPGSYELAQRSSSTIDVYSLVSALATSGLGYIYENAQGQISYASADHRSIYLATNGYTDVSAAQALANSLFVQTRAGDIRNEIVLKYGTNSNSEVTDSDADSILAYGKLAQIITTTVKHQNDAEDQAAFYLTLRAYPQANFNQITFELTNSEIDDADRDALIGIFMGLPLRITNLPLNMASGTYLGFVEGWSWRASYNSVSVTAILSPLSFSLQAMQWQDVAIAEQWNTISGSLNWADALVVA*
B570J40625_10001372218	F005503	GGAG	MTSGEIGVFIFMVLACILWAICSYAIGYKEGHKDGYQRGKAVGRHASGQAVR*
B570J40625_10001372219	F001897	AGGCGG	MAFMDSYEGNKERTDRWIATYPQGRLETHIVEFNAEKGYVLVQAKAWRNQTEINPAGIDYAHGFLAAYSEKMRRWMIEDTCTSALMRVMALVMGGTEKATKEVMASVKTETRAADYDYWTTKHGDVPSYKTREEAEEADETGWAVNGVPMCSHGSMRWNQSKPDAPKAWAGYFCSEKMKEKQCKPQWHVLTSDGTFKPQV*
B570J40625_10001372220	F000403	GGA	MSDYIEIIHPQSMTAKLLCNGVVIEEYKIEQCDKCSQLRRLDQFGYQKGYDRTENIIWFCGDCR*
B570J40625_10001372221	F000903	AGGAGG	MIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNTPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPSI*
B570J40625_1000137229	F088885	AGGAGG	MATKSSRDTGTFSFTVEPLELKNLFRLLSALPKEVQDQVRTEAQTMSKRLAGQLMQFGLVSPTPQAKLVMDSITTPRDRLIRVDIGGTKQVGRKYGGKTGKGGKRTNQSRAAAGTLLWGSEYGSHPGIDRAGRRYTNRFKAPANPSGYWITPAVDFYTPVVAKEYIAMVQTLIRANGLD*