NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100013305

Scaffold B570J40625_100013305


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100013305 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14653
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F005697Metagenome / Metatranscriptome392Y
F009503Metagenome / Metatranscriptome317Y
F021065Metagenome / Metatranscriptome220Y
F025683Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1000133052F009503GGAGMDTVQFECRKCKKITKQLIHKITDNLPDGVEVIQCTKCEVMGVAQIGNSNADL*
B570J40625_1000133053F021065AGGMKMQLTRAEEFVCHKAALELARDNNDYWQTREGGYSMDKSLHDLIAQDAQSIGSEWVVAKYLDLPFNPFEQKGKIKADVGSHFEVRWTKYVAGHLVVHEYDRPNDVAILVTGESPNYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGHSAV*
B570J40625_1000133054F000403GGAGMSDFVEIIYPQTMTAKLMENGEVIAEYKVEQCDKCSMLTKFDAFGYQKGYDRGEKIIWFCAGCR*
B570J40625_1000133055F005697AGGCGGMGFLDNYEASRERLERWLATYPNGRIETRIVEFSAEKGYVLVEAKAFRNDTDLHPAGIDFAYGYQGAYQPNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTTAKVANTEKDYDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQSHEGSPKNWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV*
B570J40625_1000133056F025683GGAGMVLDLLDTETLGRLVLAIILMVISAAAGYAKGFKEGKREGMARRKAMIRHAANKAVN*
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