Scaffold B570J40625_100013241

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100013241
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14698
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F005745	Metagenome / Metatranscriptome	391	Y
F009531	Metagenome / Metatranscriptome	316	Y
F034902	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001324128	F034902	AGG	MISTALAIQMATQEAVTDESVMGMASALYHNRNEMTNEQFAQAMFTYSAHLSAMTATLVTHACLTESQINDMLETIKEMESMGKGVE*
B570J40625_10001324131	F009531	GGA	MTLNVEIYEMEYSVSPGGVNCWEVNIQGYGTSRCISDFDTAGQALNWVVDQYPDQMIELTVTSLPAYEKEYV*
B570J40625_10001324132	F001507	AGGA	MNQTFKPYTIDELVTTIYEDNLDHFEFMENMNGGDCDCALHNTMNTIVKYWGE*
B570J40625_10001324135	F005745	GGAG	MQAINELDPRLQLAVDMRISGLDIMHGELKVLLLEAERELEEAQQIEEDNDYSDAMQSMERKYWEGQVDALGYLYGLTYQLSFAIMDKNNKETE*