Scaffold B570J40625_100012971

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100012971
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14872
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000506	Metagenome / Metatranscriptome	1070	Y
F025013	Metagenome / Metatranscriptome	203	Y
F088495	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001297110	F088495	N/A	MATARKRKKVNKRKGKYTHEQINTKLDTYAISLREFYLSLRRAGFPVDQALGMCDKNVFPDWLTPSSPDFDPVNPDHDPYEDED*
B570J40625_10001297114	F025013	GGAG	MNNVTFFLVPGIDGVEVEFALIDRGNEEFTSMLKSTYDEMIAAQSTPNVTEDE*
B570J40625_10001297119	F000506	AGGAG	MAKLKITRANGDVSEHKITPGVEYAFELKRGMGISKALREDEKQSDIFWLAWECLRRAGGQVSLSFDEFIDSLETVEVLDEEKK*