Scaffold B570J40625_100012156

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100012156
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15458
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F006112	Metagenome / Metatranscriptome	381	Y
F008493	Metagenome / Metatranscriptome	332	Y
F010760	Metagenome / Metatranscriptome	299	Y
F044488	Metagenome / Metatranscriptome	154	Y
F064710	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001215615	F044488	N/A	MRYGVSLSKDYLTSECVVIRDFLSVPKGRVLAIIVREDRYEAEQEAQRLCDLLNNDEQTKLS*
B570J40625_10001215629	F010760	AGGAG	MLDISKIVKTYSGKNGACMCGCAGKYSYTAHGAAEDGPGYDVTDSVNERSVRIIARKVLSNPSTKFEDSYAFVVEGNRIKAVFFKETA*
B570J40625_10001215639	F006112	AGGAG	MKQDYTMYIYKADKRCKTGERLFSTTVWQGRTEEGMRHECNGLYWLYPATKGWRFEYFPTMKTVKNLMSGKDVQIAHDTPRSCDPSSELYWTM*
B570J40625_10001215640	F008493	N/A	MTSERGDSYIGLTRKSLPNANKVVAERWRKHKSRAVNENRLWALYIYLKSGGLAMNWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL*
B570J40625_10001215641	F064710	AGGAG	MQDNIKEKLTSLMLQMQDIIMEDYEDNVDIQDAFNALASAFDYYIED*
B570J40625_1000121566	F000354	GGAG	MTKVNYDKFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHIMESEFDFEDVGNGEYAAFEAGVKYALTKMNIAFEAAALDLQICEVDLVESMGFMMVRCDDEPEDFVKRVMKKPVLMVDSWC*