Scaffold B570J40625_100012078

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100012078
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15515
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F059964	Metagenome / Metatranscriptome	133	Y
F090389	Metagenome	108	Y
F097335	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001207827	F009960	N/A	MLILKNIHKINGYSLNVKGKGWYFKGWDNTTSEVTHFSIREVAPPHLVRKNITLHKTATIVFNPLENKDCSFYGIEVDGQMYHYTKESLSTPDKFRDKIEKILNTI*
B570J40625_10001207837	F090389	N/A	MTIKQFKRKDALRVMNWCKRNAGLNYRRHTLPALEWATIASDNDCGDYDFEDNIISVYKSNHKSVIDIIHTIIHEWAHYKQSTKKYYEYTEIYNYQDNPLENQANELADKLKWKCKRDLFR*
B570J40625_10001207838	F059964	N/A	MNNKMTNEFTDKAYSTARNERPVYVNFSATKMSNAVKPNSIVMFKDFMGRMHKVVCRNKPEILKACAFFSMLKKESAQITRIISDYPMSYGQIDKKFIPSVKRELKAMGLGNKQVENILIMYWA*
B570J40625_10001207841	F097335	N/A	MSKRELTNEQEAISQLYSVLVAIVHSDRTPKHTAEATIQTLEKLFNDENGPFQASDTMMGMTMAMGEAMNDVVKQRNKQIERVAEGNNILTQYGLN*