Scaffold B570J40625_100011725

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100011725
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15790
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F004233	Metagenome	447	Y
F004430	Metagenome / Metatranscriptome	438	Y
F005585	Metagenome / Metatranscriptome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001172519	F004233	N/A	MTAWTPLWRIKANGTEVTSVTLADLQITTGRTDINSPTPAGYCSLRLINTDNSVYSFTVNTSILIEVQNSSATYVPIFGGRISDIRQVVTSAGNAAAVTTINITAIGPLSRLQRATFDGNLAEGLDGAQIQDLLDDLLLNSWNEVPAAETWNTYDPTETWANAENIGLGDIDAGEYTMVSRQLTDAVISNIANQIASSALGYLYEDANGLIGYADASHRQDYLVANGYTDLDANHAIGAGIGIVQRQGELANKVIIDYGNNFNSQYIAQDADSQATYGLYAEQFSSYVKNAADVEDMADRVIQLRAYPRYLFQSITFPIQNPEMDNGDRDALLSIFMGQPVRITNLPPQLLGGEFTGYVEGWTFRASVSGLSITLNASPTEFSAVAQRWNQVNAAESWNSVLNTLEWQDAIGVIS*
B570J40625_10001172521	F004430	AGG	MATGAQVLEMLIPQGGWAISGETYESIHFLECEPISKKEFEEGFAKFDAWKAKDEADKAAKKQELLNRLGITAEEARLLLR*
B570J40625_1000117254	F005585	AGGGGG	MAIRDTIYYAFTKSRGYSVFSSETQLTWRCYLSRRNSQEWWKVQSAKIRISISLDTPLSWADADFQHQKIGTTLSLTRNHNQHQWCDYCKMRWGQLKDGTWHHKAQVPAVWKVQSETPTRRMQVRFYCQACANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELS*
B570J40625_1000117255	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRVKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKQKQYALELAETGSLGRALNLAGFFAKPSGSPKKPIQTTKPQLAEFIKEQRPNDPEPIVWDVTAIAEEFGAEVIDEIPICNHGPMILKQGNKEGKEYRGWVCTERNKSAQCPAKWMKIGSDGKWAFQK*