Scaffold B570J40625_100011547

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100011547
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15927
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (40.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001154721	F010835	AGG	MNAVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFTDPDLEDRMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNAGEYNESGGFVAYFATPTDFGINDTSERARTFSRSMTIFAAANS*
B570J40625_10001154722	F013879	GGAG	MNPTVTVDTSRFDAAWKEYLPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAQVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGKVEAIYSKAMQQAYNDEAKELEDHITAAFQSAFDGSESKGIVVQ*
B570J40625_10001154723	F007260	N/A	VNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVIAGGFQDNVQARILVKFSDWRLADSTLVTVDASVWSCDVGFTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLVTYDGRQMRIMSAKRDGSGAYYALELGAKTK*
B570J40625_10001154725	F017997	AGAAGG	MNVIEQIVTALLKWFTGLAKTEPTAEDAKPDKELKQKLLDRIDRAGG*
B570J40625_10001154727	F031459	N/A	MQTDTNSSNGVGVSLATAAAAGAVSFIPQLTQWFQLGAAVLAFIAAAIGLWKALKK*
B570J40625_10001154728	F001272	N/A	MEIIVKLTQEQANGLLQLIDIAVKAGGIQNAKVALPLVDLIVNAAQPKSE*
B570J40625_1000115479	F013412	GGAGG	MRHLWSRGFGRLHSDAEVITTDDGKRFLLAVVEFEKRTLANGKPYAQRVTFRSFDPEDMDCVRMLTEGTHIMFDGDCDALAEKSATGWWYANPRITGRIHEIIPPHDAS*