Scaffold B570J40625_100011447

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100011447
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16003
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F000506	Metagenome / Metatranscriptome	1070	Y
F024063	Metagenome	207	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001144720	F024063	AGG	MTLELAIYLFIGLSMASWLLLMRIDDMKQSYYWRGRKDGFDMHRRMIQNKIKTDEVFDYDKN*
B570J40625_10001144723	F000141	AGGA	MHPQFRCNGCKRDTEFLWLGKLDTPEGFKAYQCMDCGCVGVKNVVEALHIPDSEICRCDKCGGWKFEAVVCHTCQLIGAK*
B570J40625_1000114478	F000506	AGGAG	MAKLKITRANGEVSEHKITPGVEYAFELKRGMGISKALREDEKQSDIFWLAWECLRRAGAQVSLSFDEFIDSLDTVEVLDEEKK*