Scaffold B570J40625_100011339

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100011339
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16084
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012434	Metagenome	280	Y
F042326	Metagenome	158	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001133919	F042326	AGGA	MISDALTVAAIFASGGLIGYIIGAARGRKRGRDEQWVECFLAGEKREKARREKDGRFKAKTKS*
B570J40625_10001133920	F059946	N/A	MNKRKSDEAKRIQCDAMLAQFMPVKTIAQALRMSRGTVSERAKRAGMHRHYITEAEVKVLFKHRIGGGAK*
B570J40625_1000113397	F012434	GGAGG	MSPTTALTRALVLAITAPDQERADRAIALAESIGAGCTPRQVATAKRNASKLAAK*