Scaffold B570J40625_100010737

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100010737
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16596
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056336	Metagenome	137	Y
F088364	Metagenome	109	Y
F096897	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001073726	F056336	N/A	MLQYWIDRVRVNGGPTDVTVVPVSFVTTELTDQLKRIVAPEDEIVDTIDAAKNDWIFELKPGDVLPVQIIASIQATLDASKFDGMMFAVVYRGSPLFEKRFYKRSSSENIQKSSMPIFNLNPVPVEVPE*
B570J40625_10001073732	F088364	N/A	MWILNLIEQCRPKNFQVHQMFRHDGDELVPVDEFKPGEHGHVDYYFGGQLYTHIGHWPIQNIVPRFSVPVHSAIFINDEDRKPTVCTETVRRHSGPTQSPVSFDVYAPRPHFTVSFSGGFRISVGIKWILVKKVAGTVRIQNVLGQMTRLDV*
B570J40625_1000107376	F096897	N/A	MNFTIIDNELAILREGEVEHIFERDSLSRATYSYMIHWVQDIKSPEDDPGTMWVEAAKAWDTLSPEMQATLMSIAHKESQQARDIRDGLLATLHEYQGVKRVKDTYAECIRVCFSQWAN*