Scaffold B570J40625_100010639

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100010639
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16697
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F068425	Metagenome	124	Y
F071219	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001063911	F049410	GGA	MIKGTRYTNGTEVITFSKIDFIVIGGRKIDHVYFRRKNKVDLIMPLVEWNLKGKFEWLITN*
B570J40625_10001063913	F068425	N/A	MKPQHQLITFAILCLLLVIGLNHCAKEKPKVIPFDYKAEAEMMKKQFGIEQAILLNQLENVNKRLQVANDAKDSIRKRELSLTNTNIVLMKKLRQTLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCDSVSTIKDSLIVNYKAENVTDSLLLKVSKQETKQQRKGKIAAWCVGGAMFMLWLFVGLK*
B570J40625_10001063916	F071219	N/A	MIHQEHPDNSILVIITSVIIQAGVWTSDWFGNIHLTGIYDTIYDCAKLGALIVSMWASYRVAKKNKNE*
B570J40625_1000106392	F044325	N/A	MKQLIQRLLFGYRNNPAAYIPKGGAKLTHKGGNAEAIHSALVLMQYQIRNAKD*
B570J40625_1000106397	F041191	N/A	MDEKMKLFYKPTKLTCEFIVPDIEKSDGVQKVIGFSKGWHHWNSIRLGIRKEDTYIVLYFYAYINGKRVIQRLGRFEIGEKVSVALQWGYYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVRGVEVPIEIQINNLKIK*