Scaffold B570J40625_100010482

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100010482
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16831
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F012098	Metagenome / Metatranscriptome	283	Y
F019997	Metagenome / Metatranscriptome	226	Y
F089937	Metagenome / Metatranscriptome	108	N
F093195	Metagenome / Metatranscriptome	106	N
F093225	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001048213	F012098	AGG	MPKVHKVGPKHFVQLTNFPFKWGFKFFVRGWTQEIEYPFRTSTPFIVRLPRYRALVFGKWTGTRDEEEALTMALGKREVTYDDFTEEAGWTPAPDSDREAGGNNPYSRFDLMDGAVDVYDWKTHYNLAKTTE*
B570J40625_10001048220	F008023	AGGAG	VANTQTSPLDATGKAAEQAAKKNAEALKKRKEEISIATQLEAESLEKDVFDPKKPDAPLVLDEIENVGVSTAGDMVVIRTITDIDDMSYGVGNTYTFKAGVKYRVPKSLADYLEQLGYIWRPN*
B570J40625_10001048221	F089937	GGAGG	VATIASLADRLRSEIGDIPKSFVYQFTADGTTNRYLIPYSPLDGLNLIINLNGVDVSDDVEVEEATGYIVFDTVPAADAAIIVAGNYFRYFTTTEVQSYISTAFLEHSAFHTDAYGRSVSLQNMPALEEYPVVIYASTLALYALANDAAFDINVFAPDGVTIPRSERYQQLMQMIESRKQQYKELCSQLGIGLYKIDVFSFRRISKTTNHYVPIFQPQEIDDRSAATRVHLPTPTYGNVETPVSIVTQDLFVYEGDAYEFTIVLDFEVDTYTAKADILGVGIPGVITTFTITFPVVGTADGAGLRTLKLALTGTQTRMLPRTSYYDVQLTKDGVTQTYVRGKIFKTEEVTE*
B570J40625_1000104825	F019997	AGGAG	MDKKALEAAAGTYLRAAAAAVAALYMSGITDPKTLANAFLAGLLGPLAKALNPKDASYGFGAKK*
B570J40625_1000104826	F093225	GGA	MIITVFATVGIITAALLGLRQLVEPYKEKADLFMSWFEDFKRDWSGEEESPGRDRVPGVMERLNRLDGELSSNGGSSTKDVVNKMYDNQGVLMEAFVEMGERLISIEEHLSVSKSKEPL*
B570J40625_1000104828	F093195	AGGCGG	MAGAIDKGHQSYNDFNSGAESKQAPLSAIDKKILNFAMKVSRNPAIKTHGQILRNFGMYPPEFWTRAQNLSDHPEVDPQSKEQLSRIFSEPSRPGPMTGGAPVDVYGKQFSHGVEW*