Scaffold B570J40625_100009183

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100009183
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18091
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (58.93%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004546	Metagenome / Metatranscriptome	433	Y
F007569	Metagenome / Metatranscriptome	348	Y
F013172	Metagenome / Metatranscriptome	273	Y
F027765	Metagenome / Metatranscriptome	193	Y
F032934	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000918314	F027765	N/A	MPIIAKRLDVPMNDEDIRQFMSAFEDFMKHAEVEEFNHDAWVVAKQYTDNFYEQKAAELEVTVDYYISEFV*
B570J40625_10000918317	F002243	GAG	MTAFPTLQSSDGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYTETGDNSDLPQLGNPFYGAC*
B570J40625_10000918318	F000744	GGA	MVMIETTVQLNVHEIGVILSALQELNLREENRIAREFGSVPALYNKLYSLWEQMDSSQTGLRNDVVPSF*
B570J40625_10000918321	F013172	GGAGG	MTYYWATKLNNATNRRIGKLQGEDVKIDTTTHAGRQVIGYNYLEVVVEEDDE*
B570J40625_10000918322	F032934	AGGAG	MKPITIKQFANRWYLVWSDTGRTIASFASEFEAYAARRFMIEYNKTGGNQ*
B570J40625_10000918335	F000345	GGA	VTLVSLELSLEKMTEKKNSWQEWWDSEACKQLQKSHKEGVERAVGKYFMLSEEDKLDMVQAICYIMCKAEEKGTSHRGLQDALGVYPAGFWVSELMDVHNALWSYYHDQKKEKELRDDLDALDNFIK*
B570J40625_10000918344	F004546	GAG	MDYTEEFPFDQFPWKLVYQEGKETRKCYFQTEDHRKKHIERYQLKKKDIKLSYKFEE*
B570J40625_10000918345	F007569	N/A	MNFTSEQYKLIYTAVRRYQYDKTVLNSKEYNTCSEVLDELFDSVYTQRVEQPT*
B570J40625_10000918348	F003331	GAG	MKPVTEKAQIYKNVWCCAYRRRYAAKLKQDWELYNREHQTLLMCLNIARWTTFDSEKPQYLK*