Scaffold B570J40625_100008521

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100008521
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18781
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (33.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F026825	Metagenome / Metatranscriptome	196	N
F029798	Metagenome / Metatranscriptome	187	N
F038648	Metagenome / Metatranscriptome	165	N
F055661	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000085211	F055661	GGTGG	MVLKLNIDFALEEVTPEKLELLQAVFDAHDMAARNNQNASSGAAVNAFFGSAQLTNAIASAILTLGDAHGPIGPARFVYEKFDERSLKSAILSGMKIPGFGNSFFKDSIDPAWSRVREIIEVDFKKANDRINQLHGWMKEVGKDVHPNAALYSAVICNELGMIHGSE
B570J40625_10000852114	F012040	N/A	MAKSLMDLPEVDILEWTTAGQQGELALILRNPILRMALRIVAESMPVPMPSQGSKESDIVFAAGVTAGYAHCLENIRKLAVTDTTREPEATFEKQY*
B570J40625_10000852118	F026825	N/A	MTDHHTFFRDISIGVGGPIIGILGNAVFSDPHLKTASLALGAFAALLTCVVKALELYRKLKTEK*
B570J40625_10000852119	F002843	N/A	MIVPVNIVAVQCNQNNSLFVTTGIDYDNSGTIVGSEITSQYTLNPGDDLTGQPTEVVNIANALWTPAVVAAYKAANPVPVVATADSLAEAPAAN*
B570J40625_1000085212	F005740	GAG	MKLIVQDIRSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGENNGGCVGKQLVDRGTVVSYRDMSGETNSFIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGVWIDGEKLTLALPYVQSTKKFISLTGVIRQATNTSSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
B570J40625_10000852122	F029798	N/A	MANISCADAATLIAEAQGASCMSPRERILLEIGLLWEAATLGGTADITADNTVISADVTIITADMTEFL*
B570J40625_10000852124	F038648	N/A	MPSFTIPKGVEIPENLAEGEAFQTMATIVLGKNGKAEVIEIDGVAIPGYEKKSKGKKLAERGEEEEMEVEEGATPGGGGFIAEVMQRGAGPMAR*
B570J40625_1000085214	F012111	AGG	MSERAPRRYTDGSVTFEGGVDSGVMPSEVDKNQVAFAVNASFRQSFASPRPGFIQKDYETCLSITADNTLVTADQTNVTADGYSEECYSSSGLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSATPDLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATIDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNIIDNDQTDLLWASSAVVFDNRLLMTSQPRYNAEGVVHKSLVVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKTENAYGDRCFSIARGLDGTIQIWEISKAEKFDNNLADGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWIEWADWTECAATLQCQPVCPITNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE*
B570J40625_1000085217	F004664	N/A	MSKTTGYKVLNEHMVIPGGWHYRIPETGIEVPGGSWAQLHEFVRNHYTANAIKIPSNLDDLITEYACRNGADCSYNEVNVPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRRASICSTCVYNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRPCTET*