Scaffold B570J40625_100008185

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100008185
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19189
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F012767	Metagenome	277	Y
F039989	Metagenome	162	Y
F054796	Metagenome	139	N
F062553	Metagenome / Metatranscriptome	130	N
F066715	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000818518	F012767	GGA	MKGCTATISVAAFRADWLTHMPMRALCERWTISRDQVIRLKHVWHLPPRHDRRLRAKPVRQRDPTPREIEQARREIQATWSEEVREDRRVIKSQPVTLKRIEMTDEARDAFEDQAGEVQW
B570J40625_10000818520	F002540	AGGAGG	VNYEATPAELDKYGANLNVWQQIQLLSAWSPLIGYGQRFVNEVDPYKRSIIVGEACEWLASKTKAVTDDQLVRLISDVLKTKEGEALVRFCLMQVEGRK*
B570J40625_10000818523	F039989	GGAGG	VRFLLAFAVVLVGCVATLPGDNGVTADLACETARMVVQLRNEIAPSPASDKCDNCVDGFIGDGKIKIVCPICKGTGKK*
B570J40625_10000818524	F062553	AGGA	MTLPELQAHVWDRLPTLQRSVAGRRIVSRIVKSAVRGWPVPVLEQCNADETQVVAKHYTKQIERAARHEFGMGIILTLVLGALVQEVVKLLVQWWLARQENRTQMRLLMREARNYD*
B570J40625_10000818525	F003377	GAGG	MTEAAKDTAFGIMERWGFPVLVALAAGWILRNDVLLPLVEEHRSFVKQLGETQREISQAVAEQTKLLYALQPKAAKVEN*
B570J40625_10000818528	F066715	AGGAG	MADSIISRKYRDFDITLHTATSLATTLDMRDVAGAVVSFGTMNTNASTLQMWVSPSSTGTFRRLYKSDGSVADLTLAASSTDGRAYSLPDEVFGTEYLKIVSATTNSTGTSGVVMFKS*
B570J40625_1000081858	F054796	AGGTGG	MSRRKPSPQAVADVCLASAWRDEIDDESRILLEQAHDTIVSLMARLVATSKILEVVEAEMASHKFPLLGDEDPGMAL*