Scaffold B570J40625_100008163

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100008163
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19224
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (44.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016125	Metagenome	249	N
F017799	Metagenome	238	N
F048176	Metagenome / Metatranscriptome	148	N
F054669	Metagenome	139	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000816315	F048176	AGGAG	MSNDNDTKQTAIINAATEQFRSLLETNFRSIAKAAQDGFIEDEDQTEPKAKASFTVEWDSLAQAPKVGVKIAWSVRYKDESETEIDPLQSKLGLEVQP*
B570J40625_1000081632	F017799	N/A	MTTQQTHDQDQRELEALRFSARAARAITTLEMQRKTITREYGERIKKIRALILILQQRESIGQLGIDGINAVEISPELKKLIHNPVGDLT*
B570J40625_10000816331	F100667	N/A	MISIFSDTKRLEYALARLADAAKVDLGLVIKQEGAYVARTIMQITPPTGDKIANGGQIPLVTGGTITKTKAGGLSTNARKQGENAILGDLFGGRQLAKEKSIGLFQRIGNSTEVPPRGGQPHETMGVNLGWEGSKSIRVYRKFWQPGASIEQMKAFHYANRNARGRPKQVTRSAIGRWQVQDQMWISNEAADAYLKYTQKKVGLAKAGFAAAAMACGVRVPAWIRRHMAKAGTAQVQFGQNPFVTARTTGNKIPDLQRVVDSALKIRYKVTLSKYRALLANRAVNLGFAKVKGGMVIPKEA*
B570J40625_10000816332	F016125	N/A	MAAVRDFDPTQINSDFSAILEQAGVSFTYQGAAVTGIWSAASNAFADFEDQRRDDSKFTIFLLTSSVSAAPKVTQTLSRAGITYYVERVTLDAEGAGCELGVAKVI*
B570J40625_10000816334	F054669	N/A	AQPERIEHRFLVRADDAETMGMAKQFLHDVGEPSAAEPGVIQVNAEDGMVAPHGWDDRILASGCTLIDAENIEQILGAKKA*