Scaffold B570J40625_100007782

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100007782
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19702
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018702	Metagenome / Metatranscriptome	233	Y
F023107	Metagenome / Metatranscriptome	211	Y
F043392	Metagenome / Metatranscriptome	156	N
F066766	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000778216	F066766	AGCAG	MVIKEVELEYTPNTLAKLVRDNYGKNAVEYLIGRLTSVIDERQLKVLIDYERGKNG*
B570J40625_10000778217	F023107	GAGG	MDSILLSRTVMFVGDYFTLMTTIVLDEKLRNENESDNDFAVRVASIFMNEYYGFDVEAVSNSIGVVDENGDEVEEDV*
B570J40625_10000778219	F043392	N/A	MEIVSKDYHPNGSAAPFMIAIVDDPADGDTKLVIMFDETDYVAVLSLDSLQRDEDISARNNGYHGDRYERLRLDLWDGFAG*
B570J40625_10000778230	F018702	GGAG	MKTEAKFIRRRIAVGLILLALFAWALDATTPEMCKVPTEQMNQFCLDLLYP*