Scaffold B570J40625_100007578

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100007578
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19968
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001464	Metagenome / Metatranscriptome	689	Y
F004006	Metagenome / Metatranscriptome	457	Y
F025747	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000757812	F004006	AGGAG	VTEDVNGLIQSVSINQILVAILEEHGKITVPTLSFLDAAQTDKELVIDYDEEGPSFTFSLRDKIEQQ*
B570J40625_10000757815	F025747	GAGG	VPNLNEFFNKEEIKPVELEKFGGRKPCAKCDKDAEEYFWDAMSLTMSWECPDGHKNSFKVN*
B570J40625_1000075785	F001464	N/A	MARENRQRLRKKFVYFFLNGKVHKVLRLSRAKDEVVAWSYLDNKRVMYSYAQVDKHMERAYGIVEVSKIIGRHRVTIEEYILQGKVKQPQKVYPISNPDSSWSKYMFSESDILDIHQFIIDAGHIRDLPSRSELQAILKHNLILYTKTDDGKFVPVWKAE*