Scaffold B570J40625_100005871

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100005871
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22848
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F012433	Metagenome / Metatranscriptome	280	N
F014487	Metagenome / Metatranscriptome	262	Y
F023059	Metagenome	211	Y
F086811	Metagenome	110	N
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000058711	F086811	N/A	MTSPQFKIEDALASLLTPISGLNVCIANRRGLRLFPYATIKASIGSQQIIPYSGVFEISVELNYSDSATRTTQAIFDDNYYNIFSALYSNNNTLVTKVQDNVTDLKIFMGRITSQSPTIRADKRAWQRGLTLSFIVTPDANADGLRDYDFSDALNSFYLGTI*
B570J40625_10000587114	F093506	GGA	MATTIISNISSFDYEPDITTDNGRDGITAFQFSVVGSFSALNSNFSLDQVLVGVPDQPPGNFRVVRRNMSHIAGDTTDGLYRLQVSAEGGTGDNSLFILETSFQYQREIVSGLLTIGAETASFQQVGIQYILEWLSPTVTITTNSQQEDVIAVQERVRELARITPPQIIRNKPPNEPARPGRTSRIYDGPGIDLDATNIVGSSVETAGGLFRVRASAARGQVELNL*
B570J40625_10000587119	F023059	GGA	MWEAILASLAGLIGIVAWWTKNRAKTRKERDDEEIAYKRRLRDTEVDSWIHRR*
B570J40625_10000587124	F005846	AGTAGG	VPANHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKATDDGKYPYITNPNYCSPAWQKQRIRW*
B570J40625_10000587134	F010463	AGAAG	VNYPQDMVLAATIHRVKMCEDKLREFEQMVTTLTATMAQNRAELASKGLEKFVIGVTTPLDIPKELIPTYGKAGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHPTTILFAKSRNFVVRKAKGGSR*
B570J40625_1000058714	F014487	N/A	MPLLLLALLLCSCSPRPVDHNNALPRYSDMSAAEDAMNAGKAK*
B570J40625_10000587141	F007164	AGGA	MSEKQIGMELQKTVKQLEKAKENAIQQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPSQWTPAQRTQFLEEARPIVEAYREAGGEL*
B570J40625_1000058716	F012433	GAG	MSADQVAELQERLSTVREAIARIEERQQNIISVLERHTSELAQWTNKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKARVFPR*