Scaffold B570J40625_100005361

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100005361
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23895
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (79.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023351	Metagenome / Metatranscriptome	210	Y
F040104	Metagenome / Metatranscriptome	162	Y
F045097	Metagenome / Metatranscriptome	153	Y
F060913	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000536137	F023351	AGGA	MVKEAKGGAFAPTDIPVIKRALHSYLLDIMRVEGYSEREPHPDVAVISNLLHRLGRIDG*
B570J40625_10000536140	F045097	GGA	MTKDDLKEKAIEAIPYLAVFGVAALAVYGVTKLAQAAKEIDIFPLDFGNDEYLTGLSEDSRED*
B570J40625_10000536141	F040104	AGAAGG	MMSKVTVELDWETVDRVVVEQLRSTWETLKNDKGNQAWVFVWGDQEADDIEIQKHIDAAELLLKWFSTKDQLAEMGITDD*
B570J40625_10000536149	F060913	GAG	MIKVYQIQLTDAEIAAVNNGETSDRIKAYFDRSWPMSPFKTENFQYYAHVANVDTNDMEEAFAAMNLWEGATVEKLGPCSSMSVGDILEVDGKLFRCATFGFDEITA*