Scaffold B570J40625_100005034

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100005034
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24659
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F003267	Metagenome / Metatranscriptome	496	N
F006105	Metagenome / Metatranscriptome	381	Y
F024098	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000503417	F001129	N/A	MLGQGGSMRFVDAAVSGQNFDFIVVNTAATFTTLTGSGGEDLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL*
B570J40625_10000503418	F000847	AGG	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLALTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYSHSICEIPT*
B570J40625_10000503422	F006105	AGG	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNLTTDFTILKTANLSSYTERYDKFQITLGAVETGSYRYEVYDTSSTVAAAVAVVETGLAYVQVISLTFNTFANTIQYNVYGASAVSVFDSTFDQTFQ*
B570J40625_10000503430	F024098	N/A	MSISVLSGSPQSATPVYNKMIFKVSGSLTSATNYRYVCDVKNGAGTTTLARLKCDKLPTTNFGFFDVSRVVETLMAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVSGVLAFAGNLEQLELADWSGETYFPSSALQGGEKALTTTCVQISNPANALNVVYSNSYGFLCGGAGFSGAIVSANVVYTNAAGAVVRNFSVPRPLSVSGSIHRFGAGPMNLKALTSAQCSDGQAGSFNFPTAEGAGYYIQFIDLTDAGYTATWFRLGPCERFNSIPIHFINKYGGIDSYTFTMKNRKRANVEREVYGYNSDVYATTTYNKMWAGSFDYVYALNSDWLTDAESEWLIEMVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL*
B570J40625_10000503433	F000557	N/A	MKLQDLTIDQFQRIAALEFTPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQDRAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ*
B570J40625_10000503436	F003267	N/A	MKLVHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKVVKEILDNSLVAAKIKVVVTRTNAWEQATLTEMYKASQTEDAAYLYAHTKGSSDPSLINQLWCRSMVFFNIVAWERAIAELANVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF*