Scaffold B570J40625_100003623

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100003623
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29002
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (50.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F009266	Metagenome / Metatranscriptome	320	Y
F010161	Metagenome	307	N
F023349	Metagenome	210	N
F027179	Metagenome	195	Y
F029104	Metagenome	189	Y
F060914	Metagenome	132	N
F073560	Metagenome	120	N
F101144	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000036231	F023349	N/A	MKHVLYEVTDNFDIIIKLTFENYSYLNAFIEQHTAEKKYEPKFLVLEVNDEGDIDFIRTYNGTKEISKKYVVDYID*
B570J40625_10000362315	F101144	N/A	MEAKTFTFYMTERHGYVETTRAYLRKLKISKLISPYSRQSGNKVYIEEDGDLALFTKRHTVAGIEITLKQEEKEQRFFDNMWNFKDDECQDQQFDGFKSEWSLSQRVNFVKPDSLKHLRNSTFETKDGKCLKIVPTFYLDGKPLNESQMKKLGIELTTITCGELDYEYEV*
B570J40625_10000362316	F009266	N/A	MTPKEIKILDKEIQYLCEQQDRVKAIREYTNINPGYNFLKEVETIESLYKSVLENRKHDKSMYFSCATSGWYVVYLRDKKTYKKGEKFRIKIFHTFVWTDNLD*
B570J40625_10000362317	F002398	GGA	MIALISIFLLTSVDQIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNVIEKSKFDFFAYLDTIGIEHSKVGSYYFFQRKPK*
B570J40625_10000362318	F060914	N/A	VQQKEKQLKRLIKVRSDISSSIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKAQGIL*
B570J40625_10000362319	F027179	GAGG	MKLIYMADGLFLYEKENSYVVMDQNDNVLKELKTSTSCARYILKTLQSRRAAEREAIEEINKSKV*
B570J40625_10000362320	F002406	GAG	MENIKWIRAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDKE*
B570J40625_10000362324	F006182	N/A	LLERPIMKFNFNVTGTMEIPDDAIKHYDVAGKLYALEFNDIMYMLQVCIVAEQGAGGFDILHQYEDMENHSITNLRYDDAEFCEG*
B570J40625_10000362332	F010161	N/A	MKRYSNKEYLSFKGDNMTRKNKMLYDALIDYVSYFYNCSDMPDSAKLNALKIFEALQDEKIDVIDFIPVMRQMQFSLDLLAA*
B570J40625_10000362347	F029104	N/A	MKANFKEFLTKIDFSDPSEYDFDADKTIDQNIKETLKNINKSSWCWTLFSCEGHNHEDKSKSLPYFVFIVKKKCIPVLLGMLFQTLDPRIDVKTELPLCNTNSINVSWGFTDDKYAIVNVHWWDNFLEDPEQHKKLLADFYEMSFKILEAKL*
B570J40625_10000362348	F073560	N/A	VCDVSAIDKLIDLYFENLSVIYNGNKFLLYDLRDDFVDNNRECSIDDHEITTSGIYFKDSLIVAIDKQQDFRKDDTINL*