Scaffold B570J40625_100003106

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100003106
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31048
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (36.17%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F009604	Metagenome / Metatranscriptome	315	Y
F014838	Metagenome / Metatranscriptome	259	Y
F014847	Metagenome / Metatranscriptome	259	Y
F016151	Metagenome / Metatranscriptome	249	Y
F016528	Metagenome / Metatranscriptome	246	N
F017288	Metagenome / Metatranscriptome	241	Y
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F028145	Metagenome / Metatranscriptome	192	N
F030360	Metagenome / Metatranscriptome	185	N
F037223	Metagenome / Metatranscriptome	168	N
F041152	Metagenome / Metatranscriptome	160	N
F045700	Metagenome / Metatranscriptome	152	Y
F099282	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000310612	F037223	N/A	MTLFEHILIESRVDDFKKMLSQRFSIDYVQKIINRDTSKNHKNLLWIGKILKTEPDINDEDLFKNLEIFNKVASSTDLYSFRDYSTFLNFLQKKSKEVQMGKMAQIKAGSHTIKDDKRWLVVAPQTHDASRYFGGGTSWCISTSNDRYWKDYYYAQTIVMIKDRTKKPDNDLFKVAIVGNAYEQLWDTRFNDKIDKIRELSKHVDLYNVNDNRLSGDQKINYLGQLPEDLIEDLMNYFNDDEIYERQNDHYYELARERYDNGGKEELLKSLFNTTVAYFDADTDLDEDAFGDLMSRQFADEIQDGNWDEFLSELWGACMTYQGVDDDSFYAEVNTRNFKNLISDTSYDLQTYLDLAKEILKNEDIVNMDDIIKDALIKTSDNGDPYTVIKRQANQLKDTNYNDIILSSLNAYNAKNNPTFIQGQKSLGPDFMGIVNKFKPKNIEDVIKVLSINPRAKDMIDQIQRYRRDLYESKKKRSIKYRDFYKFKG*
B570J40625_10000310613	F016528	N/A	MINNNELFAKVLAENPLPYRFGDKVNTNRGIGYISGYNFKDREKTWKFTIRPHGLTNYYTDVETVYGKVE*
B570J40625_10000310614	F014847	AGG	MEFESNADILRDLMDQLHTLHKENARLLQKIEDLEKHNEELNRKLKSIQALFL*
B570J40625_10000310615	F009604	AGG	MTIQNKCGCGNEIHPERYALGYKICLKCGEKAAAKQKPFGYLHYGHKTAGSIVITSKAGFDNYSKVSYRKNKGSNMGYASRLTTSF*
B570J40625_10000310623	F028145	N/A	MKIFLVFFINLAVSLLSSILLYKLFKVDVSPIIISIGLIVVYMCLPQRFHDWIAEK*
B570J40625_10000310624	F045700	GGA	MNIRPSQCFECETGTYKDVTVNYFSQLSGGRSCVTKDVTIQRCDICGAEILDSKASKIIESNIERNFPGHYDKWKTKNKPRL*
B570J40625_10000310625	F000962	N/A	MENQEQTQIMNAHVPEEIKSKYPHMEFRGKQRQMNDRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS*
B570J40625_10000310626	F030360	N/A	MSEQTYMNLKDAVKRPVLSEKTVNRSNKAFVRMVDNYQKWNESITADELRETYEDDIFNCLFEYDLDGYNLAEYLKSKIYLEPDAGLVDILDDMIYVKKSLEDEMLKQWVKENFLTISDDVVGKKVNAKQGSRKYENHYITGIRPDTYQVTISDDSKKYGGYIVGFENVTFL*
B570J40625_10000310628	F017288	N/A	LVGFFLVYICVIVNSGYHNTQTQRKNMADNNKTPYELRWEILKEMINLTRDEWHHKREVAQYNAEKSGKSLEYGGDIPLHDALQRAENVYASFICKK*
B570J40625_10000310631	F016151	N/A	MTQSELKQLIKECLNEIDFAPGFRPTQDLTIVSTVTGSDVDHLKKYVLELHRVLTANFGNDVQFEEKLKMSILPNKDKQIETTFTIIDIIDELMSKTVRENLQDIHEQLTMWSINQDLVIDFTFKIKK*
B570J40625_10000310639	F014838	N/A	MKESLKKIEELKNQLNAVKSELQNEFKTGLKKIFVDNPTLDSVEMYVNNHEFNDGGATSFYIGYEDLKIVVEGEEVEREWDNKTKEYVENPVLESLIELFGDVHCIHEDLYGDEYEHLSITREEVLKF*
B570J40625_10000310640	F022636	N/A	MSTYRRATLQDLAKLGYVPNTQKYKEHIEFARKYYPPEATTMVMSIHSEYNDCTYDNSFQYIIVYDMDGNELPPLKKTAKECREHWTTEYLPIPNTRDGNYGASESDEPLDDVVIPLTSEVPELYIKES*
B570J40625_10000310641	F020529	AGGA	MFNNKNIVKYCAKYFVLMAVGAYIFNASVTLINQKSDVANLVGSALFAGLFVGTLLILKSDVTKLVKNINKTENKENE*
B570J40625_10000310643	F041152	GAG	MNIVDYIVKNWDTLPKSKFDDDHIVIFKEIENWDGGYGHHSYEGVGVDKDGNVTWCYSSGCSCSGGPSLETKKDLKVFVVNEGIDLNVDPSTINFNSLQVEFDSY*
B570J40625_1000031068	F099282	N/A	MKVIKILDIYCIMPYKIKGNCIYKKDTGKKVGCTKGSVKKYLAALHANVPDVKKNEIKSKLKEVLRRSLKESLLSETANSEVSDVTLKAELTKNKGINFEQFEIDKIKDTLKFNINKEDTDRGMELTFEKSIGENTFYFVIKKLINESDSSKTSFKYIIFYVEKKNAASLEEKTIVYSKLSDPIKALIEGEKTDLSKKSKIESEIVKFINNSMKVNI*