Scaffold B570J40625_100003078

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100003078
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31233
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (28.42%)
• Novel Protein Genes: 23
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Associated Families: 23

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F002455	Metagenome / Metatranscriptome	557	Y
F004723	Metagenome / Metatranscriptome	426	Y
F006546	Metagenome / Metatranscriptome	370	Y
F009264	Metagenome / Metatranscriptome	320	N
F009402	Metagenome	318	Y
F009682	Metagenome / Metatranscriptome	314	Y
F021965	Metagenome / Metatranscriptome	216	N
F024743	Metagenome / Metatranscriptome	204	N
F027178	Metagenome	195	Y
F036669	Metagenome / Metatranscriptome	169	N
F037694	Metagenome / Metatranscriptome	167	N
F039506	Metagenome / Metatranscriptome	163	N
F045702	Metagenome	152	N
F046324	Metagenome / Metatranscriptome	151	N
F047570	Metagenome / Metatranscriptome	149	N
F048935	Metagenome / Metatranscriptome	147	Y
F054024	Metagenome	140	N
F058129	Metagenome	135	N
F068462	Metagenome / Metatranscriptome	124	N
F075864	Metagenome / Metatranscriptome	118	N
F093750	Metagenome	106	N
F099173	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000307811	F054024	N/A	MSDKYSNHFYIEGPYDDLVNVTKGLDFAEGSINYDGWEIEGGSAVLHFDGYFCPLDEAANASVKYPSLKIIFRFTHELLTAGLYIYDGGKIKLRSYYDWDTGESSVKKYD*
B570J40625_10000307812	F027178	N/A	MKTNMQKYVVMIKDGGKWEEYARFKSLDLAKVTLELVKKDFPAKIIELK*
B570J40625_10000307816	F009264	N/A	MRAYLEFSLMDDEVDHLTKIGFGAKILDAYEMENGFVAVVVDWNSKTGSHKLKYASQGCVTYSSDKIVGVELEFRDYPYQIDDCQMNPRISVKLDYDDFNKKMDYVCFQNLKYQAIVYFAPDSWNCSRNSKKIKF*
B570J40625_1000030782	F045702	N/A	MTITQTLNRTAGRFTTLVVNKGAANNTFCAQITGATEKTVRFYDVNADANRVVPTSSVVYARSGKVQFGKLRK*
B570J40625_10000307827	F002455	N/A	MTDARTYYYDIYGKMEPDYESMAAYLLDEGVLFTTSAIDRCTQKECLGLYILINDYFVPAADSESVTYNELPKLFEMYKEKQWDGVSQFVADKRGIPDLHWRDKNSAFQKKLDLL*
B570J40625_10000307830	F039506	N/A	MTKYVKLIAKPDTWFKAGTEVFDDDEFGKRITLESYNKWLKSGSILVRGIRVCECYYETALGYKLGEEREDGELCGIDEFDMTIVDDEKDIPWPKPLDPPTTTAEAEARRRKFEDGIRHIQG*
B570J40625_10000307835	F093750	N/A	MKFKVSYYDFDTDKYVTKECYRMGFYDGVFEFMPVDNPIKIYKSIIIDHPIFSVSQNTGFISISVVGYQYTKNGSYEKTTTKVENVRED*
B570J40625_10000307841	F099173	N/A	MIHGGNPLRSSDGGFATYECKTMQDIRLTNDWKRVNQSDGCRRREIELLMKQRDAANKRINRLEKAGDKMHNWLMSKNRIGCDMEIASEWTRAKKGKP*
B570J40625_10000307850	F058129	N/A	MTVYLVYNNSDRDGGVDAIFDTERKALDFMIKECYPDHYFKSMDSTSLDNLARKYVVEMTVR*
B570J40625_10000307857	F075864	N/A	MTPDPNLWREIPQEVKDAALLLGNYFKKQGIDNWALYDVCSRKSVDNLENQVKNLETWKNKQLYGFID*
B570J40625_10000307859	F024743	N/A	MDVVTLSNLYSHASGAYNKVKDAEDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLILFNYQNEK*
B570J40625_1000030786	F037694	N/A	MLNKDQAFLVNEFIRKNATRNLWEVSDKLYTLLSEIKKIEELPQNNETQIAAA*
B570J40625_10000307860	F047570	N/A	MKMTDENKLKIVTLSHNIKALCYILDKKTFSEQCVTSGNFIEIDYLFDLAKKLKEMNKEE
B570J40625_10000307862	F004723	N/A	MNKGDKFIHTDIIGKKHEVTYTGTRRIVKGCEFEFFVDDKGGGCFFTDTEVKKMEKISD*
B570J40625_10000307865	F046324	N/A	MTCLKVKKEAKLEECAVAWSGDTISVCNQCRMSIWDFDYDDFHIEPPVAGENGWSY*
B570J40625_10000307866	F048935	GGA	MNKINKLNAEFKKATKAQKRVMIAQDVLAQLKAKRYVAESGCWVRIHYNPTTVAETDSVQELFVEKKIESCNVCALGGLFMSCTNFNNNTLLEDLDDASEGLGNLIEEEQLSNKLNKIFSTNQLKLIESYFEANGGFFRDYDEDDRIEVFYNKNSSDKKRLQLIMENIVENNGTFVPAKLKI*
B570J40625_1000030787	F006546	N/A	MKWKYIGNRAGDATKGEQYIVEADELTEIYMKEMPYPQFVKVYVVQPPSPRKNFMTMKVGDIVKICNPYYDMQHYSHPGFVPVKE*
B570J40625_1000030788	F068462	N/A	MSDITYTWKVNNVKCYKDLNGYQDYVYQTYWNCAAATLGPTGQAYDSSFAGATPLGTGAASVSGYAFKPFIELTQDDVLNWIWTSLPSGAGKEYYEQKVSGELVYKMTYVTEEPALPWNPPAPTGTP*
B570J40625_10000307885	F001840	N/A	VKEEKDSEFLICDCYSHGLLVEKFDDEEVCLSLFERGLSGRTLGWSERLRWCWQILRYGKPWSDFIILNAENQKKLKEFLK*
B570J40625_10000307886	F036669	AGGAGG	MGMYDSIECKCFLPMPDEPKGYTGSHGFQTKDFDCALDIYIIDENGQLFIERRETEWVEGDPNAKGFLDKVGHIKTKKTWLESVNKTCTVQFYDFFSSNKTDYDYWIVYDAVFIDGKIKDIKLTTFEATANGERKKKDIEFHNKLREWDEFRKTRRYKYFLNPYNKILKFICDKVYKALCFLSSRVWRVHNFLMIK*
B570J40625_10000307887	F009682	N/A	MKKDLYMKNPNEKIVIQSDDLKYDGKNIIIPSYYDGVICDYLNRVDVKGMNDADHQDYLAFRKFFEDIMDYKVDKGGN*
B570J40625_1000030789	F009402	N/A	MKKLEKEFESSSFKYKQIHRENMFAIYERHHISSDNKHYEAIKIQSHNGYEIAGNKIPPSECYPTSNSWGTQGYTCLDKKAAYNRLDRMMKEDVRNKEIANKKAERKKAK*
B570J40625_10000307895	F021965	N/A	DYTSLSEEDQRKAEKIAEKEIDRIMDEIIFAFDYIIDPDKYLPFPESSTKWDLKDKNYFNREKTIEEKVAWDEYMKKCEQYNERKTQGLQLFVEHMDILWI*