Scaffold B570J40625_100003076

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100003076
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31254
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (11.90%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012966	Metagenome / Metatranscriptome	275	N
F016969	Metagenome / Metatranscriptome	243	Y
F035738	Metagenome / Metatranscriptome	171	N
F068838	Metagenome / Metatranscriptome	124	N
F077303	Metagenome / Metatranscriptome	117	N
F099161	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000307617	F099161	N/A	MEKNKKLNDLKNKLSQLQDELETKDNNPIESNRIRREIEIVVKDIKREELKQPVSVERGKELFANMRKELGLDETISYKEFFDL*
B570J40625_10000307618	F016969	N/A	MTKQEAEKKVYELTEKLIFVKKDFKDVAAGYKEKMKEIESEIKAIVEETSSLPLASSKDIEGDDE*
B570J40625_10000307631	F068838	N/A	MPYFNIKSSPISFGQLNNIGLSVGNQSGTAASANEFYELEPAIVLDVILDETHPEIVNKRHLVDSRNIPQNYKGDQPTNRDIDYTYIGACKVRLCFSQQGLEKEKLSWAFPMESTGIVEYPLLNEVVIVVKYLDKLFYTRKLNLNGFVNQESNFRLESFYGNNTGNKDLVSDDDIKTESITGPKSLNAHKKIANNQVKGVLGSYFLSNSKIRKLRRYEGDTTIESRHGQSIRFSAYDNIRENDKGFYPDYKGDSTVNTPNEGCGNPMVIIRNRQRKLSLDKPIVVHPKLPLIPTITDSQKNVGGLIDEDINHDGSSIYITSGLTKSKWRTTCYKSIFQAGKEEQPLFSPVGSTAFNFDIENLKGDQVVINTDRLILSSRFGESLHFSKERYGIVTDSEYTVDAHDQIVMTTNNKTVFNSPAIYLGQYGQTNEPVLLGQTTVDWLYDLCNWLLDHVHWYNHTHPKTGGPNPDKTQETVQDKQLKFLRDNLDKLMSRRVFVTGGGYAPGVDGVTPEGFKNATEPVSVNIVSGEGLPGEFKGKLRREGPVEVQFEQV*
B570J40625_10000307633	F035738	N/A	MKSNELKEIIRTVIKEELDKTLPTLIPKVLTEILSGKQSNVIQSNQINKTPVQESVQKPKEVKKYSSNPVLNEILNQTVVKIPNEGSIAGLDSNFKSQAFAGMQINETVETPQPVAPVTEEQGKVMNVLNRDFRSLMKAVDKKKQSGSIGSGMVSMG*
B570J40625_10000307637	F077303	N/A	MSIQSQINDFLLTGQFTNNIDEFGNVNLYVSSSEANEQYIVFELINFNYKKDEIENLYDVNITEIQTETVVQKQVLDQTFLNEYNKVLSENQDLKERLNQLVDEVQSDPSKSQLSAARDLIVELRIKLKQGTKSEDFSDQFPFNLKSENE*
B570J40625_1000030768	F012966	N/A	MKKLVLVLAALFAAASVTAEDTSSLTFDAGYNNQYIINGVSRAEGTAYAGFAAVKSLKYADVYVSGVLLPKDGIDQSHWTVGTGKGVKTFEWLTLRLDATATRHQAGGFGIKNSTEFGVKLEAQNPWLTPYVRGAYDINLEQAGVGAGVYHTFGLPFGFKATPSAEFVKFERYDAVTAKLNVSRPIGNFVPYAEVGVIDNNFSTAKYRFATEELTAEVLYSAGVKYTF*