Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100003038 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100003038 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31433
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (24.07%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31433

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (24.07%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017271	Metagenome / Metatranscriptome	241	N
F025278	Metagenome / Metatranscriptome	202	N
F032560	Metagenome / Metatranscriptome	179	Y
F043816	Metagenome / Metatranscriptome	155	N
F054853	Metagenome	139	N
F086624	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000303831	F086624	N/A	MTEVKKESFGAWINKTKDGKEVIKFTINGQRYNMWVNSYKDKNSQPDYKIYEDNYVAPTGQVQETKSLTDDDLF*
B570J40625_10000303832	F032560	N/A	MQQTYQDLEEGMQNLLPMERQMLLAKVYHYAWYNEEAYKELLTFINHWEKHSEFKAVFFNQDSEESTNQI*
B570J40625_10000303836	F054853	N/A	MEEEVKPDAEPIEELEWEDAESTTRSDLISCAYYAINAVDEIDLTLISKIEGNKIKKIRRQSLEIIAEVINELHAEMFDTEEDI*
B570J40625_10000303847	F025278	N/A	MTIFLTIVFLVHLISWVLYQKHQFKERDLYEIKPQEAYEQNKKWHFWKGINHISVYVLVWSLYGFWSMFLFATAFWFGFDILCNVIVLKRPAFYVGVTADTDKFIRKVAELIKIKPEYTSALIKILILTILLILK*
B570J40625_1000030388	F043816	GGA	MKELIELRDWVDQQCKTGQPFNCADVLNKIDEILEKDTDIDEIYLTSCYEME*
B570J40625_1000030389	F017271	N/A	MITNFEEITKVMTEDEKKLVPLIIKGLSTKTKVNPIKAADIVNAINENKNRYGIKLFSEPRLRKIINFIRSEGILPVMGTSNGYYITKDRAELESQIESLTQRAEAIMTSANGLKKFL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100003038

Overview

Ecosystem & Geography

Associated Families

Sequences