Scaffold B570J40625_100002923

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002923
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32012
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (68.63%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F012758	Metagenome	277	Y
F036596	Metagenome / Metatranscriptome	169	Y
F043233	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000029231	F012758	N/A	MLEVKLMDEPGAAPGAIEKAKNGREIFSDKIADEIVAACGSGFTLEKAGALVGVNANTIKTWASRKPEFARRVETARKKHELSLLRDIELAGQKSWQAKAWLAERVYNHAIPSARLQVSQDVTHGISGNLASLLAGIAGRKKITSTPEKRQIESGHNYIDVQPVATKPENHLSNNK
B570J40625_1000029232	F036596	N/A	MNKTKTWKIGECCTGGIIQAKISENAYFPSSTTIKILVKEWKTGKIIHSDIFGRIHESRLVNYLHDMTTSYHAETIMEWIKENAWQHNVLVTMEGRN*
B570J40625_10000292336	F002149	N/A	MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGVVEDKDGIAGVALARCIKDGQEPNHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYCYMTFMRKARV*
B570J40625_10000292338	F000635	AGGA	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRLITLGSNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDGRTGDPDTYHFTGRNSSGVAELNLYPRLATSGTIPLRVVEKLKCLTRTNVIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA*
B570J40625_10000292346	F012569	N/A	MSRALDKFQAQYGFSVGTQGTAPAGYWAIQMLSDTTFSAISGRYDGTLTGITIGAGNIIYGEFNSYTAGTGTVIGYIAG*
B570J40625_10000292347	F010603	AGGAG	MSNELFRSPIKAKNKTVRIVSTPFENVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*
B570J40625_10000292348	F004760	AGGA	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSKYTPDSIKRVALRRK*
B570J40625_10000292351	F043233	N/A	AESASDLSKKVAEYEKELSQLRKATTPASGQPKGPAKTKAFHELTLDEQERELMKMASEVDRG*