Scaffold B570J40625_100002765

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002765
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32843
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (88.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F007519	Metagenome / Metatranscriptome	349	Y
F027821	Metagenome	193	Y
F034467	Metagenome	174	Y
F053072	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000276512	F053072	AGGAGG	MRFLTMAERFIFKIKGGSMVVVDIGYKKYIMPKEKAMQLVEVLESAEVYEEKWWSEDKRKELGMTETYTYHVYPNEANFSMQIIGDSKYQMARLAGKPQEK*
B570J40625_10000276516	F034467	AGGAG	MQHEIKYQSKVIPLRDHNHPKFKWVDAASTDVRRTWRKARLLIRLTKGAAYESRT*
B570J40625_10000276519	F001629	AGG	MILNQGKLAGGLADELIAVVRKYDETLYMSTVIGVLELVKQQLIQENVEGDDDE*
B570J40625_10000276525	F027821	GAGG	LTIDNSTGKDKEFYELGQKMFDRIKPLKPIKPYFDTIEADIELMWQVNSADIEALEDAKFTLTAIREAEAGVYDKIIDESLALIDKALGMSYSDAMERVMDRAKGNK*
B570J40625_10000276526	F007519	AGGA	MTTGIEYLKLEKKRKGRGLGKKPALACTSLRLPREVMDYFDTNHRMSKQAKMREVLTEYVNNQTGNKP*