Scaffold B570J40625_100002754

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002754
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32911
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (18.37%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003127	Metagenome / Metatranscriptome	506	Y
F004474	Metagenome / Metatranscriptome	436	Y
F057881	Metagenome	135	N
F065712	Metagenome	127	Y
F066704	Metagenome	126	N
F075866	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000275412	F066704	N/A	VEFWQHEAYLIAEKVTGGNPIYRDLVSHVYLLVYDIDIPSKDLPRLFARYAYNQYNWRDSQFNKQYRLNDPLPELDNRETDQEYQETEIQLLLDSYMHQSPTDDQELFTKEITKMHLMGMTYREIRNETGISLDTIHLAIKQFKNDLFITYNYSNRDCKSSYELQSP*
B570J40625_1000027543	F075866	N/A	MADLDFLDDFGITTQQAEQPASVYDRFLIDISNQLAKEFRDYTKRVASNTGALAASIIPVPNGKLSFRLEADDYYPFVDEGVNAVGSNNFGSRFSFNYPGVSHNMAKAISEWKGLDMSHAYAVSSNIKQRGLKPKNITDSVITDEVLNKIALDLAEITGLMFEIKFDKNTETWQ*
B570J40625_10000275434	F004474	N/A	MNYLLSVENLKKLGLIHNNTDTKLLAVAIKRSQDMHIQPALGTPLFKALLTRVETNTWTPDYLTLMNDYVVPCLVAFVDYRAALLLTEKMTNKATGRVSDENLQANTLTDVHEFRDQLRKDAYFYKERLVGFLMDDQATKYPEYCDMCSDHCNEYVKKDKTGYKPLNWIQ*
B570J40625_10000275438	F003127	N/A	MTTGYNDRTCTNGKGGIKSVMLFPLGNVTGSNITDNEVDSLTVTGEVFLYKLKSNLSSYTAPIRVNKGNGTLWYEQTLTMILASDTKELRSEIHLLGQNEVVAIVEKADGTYVALGFGEGLQIAEASAYGSGVLKSDRLGHDIIMGGLENDPVPDVDPAVYASLLGQQSPSI*
B570J40625_1000027544	F057881	GAG	MKQLQINLPTSLENCTPEQMTRWLMMAEAMKDNKDDITQFLIFQCQLLSLFSGESISKIKRADVDSIQEASSHMLKLLTSYHYQEPKEYITIQGQEYRFEKTFGHVSTGQIIDLKLIEDISQDPCQALAIMYVERGMEYYQEDHRGRVLNPNEKRYKVFKEHFPGDEFLNFFSFFLDLSEKRKLAILGIQMARQRMEMMKIEQDLKIQNGLIGPLSSIDYPKKWESVWTKLHNSLM*
B570J40625_1000027548	F065712	N/A	MIQAHISESLAGLDKGLIEKFNLIPYESCLPETVFMGMYREEDLVLLAAHIGASTIVWFGSDAKDLPDDWIKFVKGSVNIAVSHQVQETLEAKGVEAIWCPINAVIPHEWPVVPNGDKIFWYSGNAPEYYGESLINEIKERINIPIIRAGHDTFTKEQLVDVYSQCFLNLRLTPHDGCPNVNIEMGLMGRRSIYNGDLPASIPWQSVDDICQSIMREYLSRNVDNAYISNIYHNFVNYERMSTLFI*