Scaffold B570J40625_100002682

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002682
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33217
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012346	Metagenome	281	Y
F018910	Metagenome / Metatranscriptome	232	Y
F033041	Metagenome / Metatranscriptome	178	Y
F059974	Metagenome / Metatranscriptome	133	Y
F091630	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000268238	F012346	N/A	MIFKFYNRNDKDKETIGRVVTTSRLQAAKMFAERKQLPLKEFLKIFGVTTIL*
B570J40625_10000268244	F018910	N/A	MKNLITEEFKEKFKAAFARFMNITIVASTLIAGFGLGYYFNELKMKPKSVNETILNKEVRIAIDSENKLIMMDRKTGGYTIYSDSIGQIIFKMYASKIASPIN*
B570J40625_10000268247	F059974	AGG	MSKTSNNQKLAVLKIWLEELKRKGKIKKQPNWLKEILNED*
B570J40625_10000268248	F091630	N/A	MKIDGNIIEFFDSMPDELLTKLAIYDRDALERICVALTLDIQLLKEEIEREKIRLAS*
B570J40625_10000268255	F033041	N/A	MEKIKINSNFKFTFDTDVDLRRAELTGYIESYDIVRICVKRLDNGNQVDFPIKTREDYFETVASLNERSNEYDMVEIYQDTHMFDMYDYI*