Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100002620 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100002620 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33586
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (86.36%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33586

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (86.36%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F004006	Metagenome / Metatranscriptome	457	Y
F078287	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000262010	F000369	GAG	MEIELSDHFDRMNKVVSELLKGNNPTQIASLTGFKRADVVELIDEWKQVVHNDTASRERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAEIAGQIAETEKKQEILIKILKEVTATCPKCKLDVAKRLSQITGIVEPIILQEEVSGS*
B570J40625_10000262024	F004006	AGGA	MTDDIEQLVASISMNQVLVAILEEHKKITVPTLKFLESKVSNKELVIDYQEDGPSFTFSLREIDENV*
B570J40625_10000262032	F001464	AGG	MVREKGKRARKKFLYFFLNDKIHKVIKSSKARDELIAWCYPDKKRVLYSYSQVNKYKENAYTVKQVGELLNKHKVTIEEYILNGKIKTPQRVYPISNPDSQWSKFMLRESDILDLHQYILDVGYTKDIPSKAELQALFKHGIILYTKTDSGFVPVWKAD*
B570J40625_10000262033	F002501	N/A	MWCAKCGGRVFVDRVFSQKLSIELFCVMCGKRWMIDKETNRFGKWLEKREREHEKSFSISS*
B570J40625_1000026206	F078287	AGGAG	MPYSVKQGVSGCNGYAVVNDEGELKGCHPGRTAALAQMRALYAATSDEQKMKDKKKKIY*
B570J40625_1000026208	F000376	AGGA	MSTYQERAKECKCCGKHVPLPTVLKEYNEVVVCPTTFANVIEYKRIWTTLGKRPSGNIRKHFSEYVQQLVENTIDKNEDGTL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100002620

Overview

Ecosystem & Geography

Associated Families

Sequences