Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100002580 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100002580 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33863
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (96.72%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

33863

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (96.72%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F031754	Metagenome / Metatranscriptome	181	Y
F032962	Metagenome / Metatranscriptome	178	Y
F039471	Metagenome	163	Y
F102503	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000258010	F018127	AGG	MAKKENNWIPWAIIAGLVLYAASQQPKGGGDPSKPAGVTAVVRSTIPSIRAAYKQAFLDAAAKIEAGEIANQEQWTKFISDNAGGKNREALDKVYSAIDQLNLPVTFTGKESEIAKINREIAGAW*
B570J40625_10000258014	F031754	AGGAGG	MVALLFGLFWLCSEPAKDPTQCDLTDSKPLIEEVAKAKDSIILDAAKDAAVSISLARSLTENHIADANKMVDPMPSPSDKPHEKTKREILIFVSANCPPCDRWKRCEMQRFMDAGWAVGIVEVHSYGLTPTFEVESGDKKVTLKGYTTLEQAAEAVR*
B570J40625_10000258032	F032962	AGGAG	MAALTVADTGLGATISGTGLITTQVVSIGEMTISVDTLDITSLDTTGFEALRPSDLRKNPEVDVVFNWLGAAIPITTAMIPTSEPYAGISVTITLPGAGSLQGTAFVKEAKTPKLAKGEVMKGSYKLQFDGATDVTFTPA*
B570J40625_10000258049	F039471	GAGG	MDEFYLLVTAWHEWGKGSKLRQTPKRKTRITRVAKCTFDKDAVYDGVKTGQWFKIEIYDSPFRGMLDAVFVGLSSDPGIRAAEALAERMVSGLSLASGVKWEANCGPIDAEDAALLRIELEVV*
B570J40625_1000025807	F102503	AGGA	MERKNISQPEEAWAAWDKQAAAMDITLSGLIFEAMNEHLGLFLTRKTKRRPKSKPVAPKRQKRNSWPR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100002580

Overview

Ecosystem & Geography

Associated Families

Sequences