Scaffold B570J40625_100002518

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002518
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34234
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (64.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F017301	Metagenome / Metatranscriptome	241	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000251810	F006844	AGGAG	MATWDVEIIFEPTGTYMNFEYETDTEDENDIFNEITNQISIIPERTDD*
B570J40625_10000251828	F017301	AGGAG	MSNIDTKQLKAMGASYGRSVLGAGIALYMSGITDPKDLWAALVAAIAPVLLRAINPGDQAFGLLPTVESVDKALKAAKAPAKRAASKSASKSKK*
B570J40625_1000025183	F084233	N/A	MTLNVEIYEMDYSCSPGGVNCWEVSIDEWCVSDFKTAGDAIQYVLDKYPYDELNLNVKSLNWYFKEYADDYAV*
B570J40625_1000025188	F007112	AGGAG	MHTLHYLAVEADNKQEAFDKVVVSLQTNEDGYRIGDWSDWHVVGGGRWSTNAQKSKDFMDGYNHDSTDVIGYAENKEKFQEVIKDILRFRSQTMNRNIVEIKTDKFISQMVDYASEGGRGPWNGDTLMNVYSIKQAAEMLMGSWTSDSGFYDLQEHVSEFEYLNERLDKPEQSALQYLVPVDFHF*