Scaffold B570J40625_100002484

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002484
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34401
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (78.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y
F058152	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000024843	F016273	N/A	MTQTEEAILISWRLQQWYEGMVLDARAMQDLQDAIEMLKTLAKQVQK*
B570J40625_10000248445	F058152	AGG	MIDYSESLIKITLLVRQYRKLVLKGQFDAAADVAVDMQIAVVDLQEWSEAQCIETQNS*
B570J40625_10000248452	F046382	AGGAGG	MNKRNWPYGTDMSEPNWTGRTTRQMRDYKRSDDRIPPVAWVIGLIGLALVFGFFPLLSLVML*
B570J40625_10000248453	F018369	AGG	MKYSYIQMTDEGKRQLMRELSRELTDKKIAELMDQFADGVKTDSNGEPYIKIDRDEVLMCAVPMYTHFIDVNHIETVTANEEGSDE*