Scaffold B570J40625_100002442

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002442
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34617
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (23.26%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023345	Metagenome / Metatranscriptome	210	N
F041040	Metagenome / Metatranscriptome	160	N
F041149	Metagenome / Metatranscriptome	160	Y
F050320	Metagenome / Metatranscriptome	145	Y
F053293	Metagenome / Metatranscriptome	141	N
F060905	Metagenome / Metatranscriptome	132	N
F101154	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000244221	F050320	N/A	MKNKLIIFSHHYVNDIVIERFNNLKNLNLTWDVIPIGFEGYNLIPNSLIVNKEKYPTNKAINYYVPNKLIDWFDCDLFAYDAYFQMPNYDEYFLYEYDTTSNVPIEEFFNTDVDFFGNGICNPAREDWDWVKLYRKHNPYNIKFPILYAYGQSTCIYFKNHILKQCVNEVITNKHLYDGMLSEVRGGTLVSQFTSLKKGREDINDFISWTPDDININTNQPHFYHPVK*
B570J40625_10000244222	F041040	N/A	MLLKSHICILFLHYSNDNVTMQNYKLLKKYNPTKNIYPIGFENHNLIDGSHVVSRKQSYPKNDILNETCKREYWSEADLLIYDFYLNYPNLPTYLVIEWDTYCNCSLESFYNNALTMSNFSHIIYPKETLNNWYWYTQLSDSQKLIPNIGGMTPTSGILFTRSVLSSMVTLIINNPRQYDNMFSELRLGTLLQQSGYTLNKPFLNSESYINWNIDSITFDPSKPGYYHPIKTIV*
B570J40625_10000244223	F023345	N/A	MSKTIKENDMGDRMYTGQSYVQGGLGGASGLDTYSSPDVSQNPGSFKYAPSIAGSASDISTPPPEDYDNKSTYDPGQYEKDVQDIKYKVTPDEVLAGLQYELKKMVFKRKDLAKELVVRNLKEDNKYYSKLHMLNIDDDDKLPVKPSFMSPESKAEPYNLKATPQQEAVDYRTPQEKEIGKIIREMAQKKYEKRFPKA*
B570J40625_10000244235	F053293	N/A	MYIYEYMVTKEIILDILNDKDNFVNIVKEFPGLYSPCVTIKQNVSKENVDVAMNKILAFIDKSESFKKLIHSLIPKIKEQEKNNVAGLVLEIDKNDESYSNLIEKTKKEKWTYKGLTIVDGYDKLKVYFY*
B570J40625_10000244239	F101154	AGAAG	MRKNKVDKIKLLNEENDLEVTSDIINAYKKNTTRKRITKKGLEKYYNNLIQFMNSRFI*
B570J40625_10000244243	F041149	N/A	EATTKLKSDDLHWFYQVGYSRGGRFRAGGIVWCDFDHEFSPIDDLRQIVGHTNQWETGRAAQYHKEGYMNITDADNICIDCNLDQYITIANGKIELKNYADL*
B570J40625_1000024425	F060905	N/A	MNKIIIILLSCVSLFANELFLYDANEKTELSEVVDNKLNVLPTTSGKTFTLSNGLSITTKTNDYANYVFPHQIAVNQLENTSVYFSQTQTVYENDFKLPNIVKVKESLFNFTFDGEIYCVNVTTNVYNIGTAMGFINFGKSRFFAKSGSKYTHIYVVEGKILVLDGKSSKKKELKEGDYLVITPQVNLSPRSNVGISTGNSFSVKEVDDAEKEIHTKELEKIKNKLDNVLFVSYSTNIFGIKLK*