Scaffold B570J40625_100002267

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100002267
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35771
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (71.88%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F032194	Metagenome / Metatranscriptome	180	N
F046894	Metagenome	150	N
F046896	Metagenome / Metatranscriptome	150	N
F060717	Metagenome / Metatranscriptome	132	N
F073146	Metagenome / Metatranscriptome	120	N
F078379	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000226729	F073146	N/A	MSEPVSKAVMTVTEVAPFRFAIEIEGSDLSLEVSQIMVKFLNDCLQQIHADQKIH*
B570J40625_10000226731	F032194	GAGG	MRNKHCMDAFYKTLKEVDIPFGQSMICEHFFASGWDAAIDALSLAYQRQFENDGVDTQLIRRDPQEPPADDDKE*
B570J40625_10000226734	F060717	AGG	VKLADVQPDNVCFECGKAWGTHPLKSSENHRSWIDQCDVCLKLTAVVDVSEYGYIKEGWDGEKVV*
B570J40625_10000226736	F046894	AGGGGG	VSKYDSWLEEPYRQMAQADDHQEYVWTTYMKPGKPCDPMDLDNFQEYLADATADYAGAEKWENLREYADKGEWEKFGRAIYFLVHDHIENKLIAEEE*
B570J40625_10000226743	F078379	GAG	MHWNHRVVDFSDENDGNPWVEVCEVFYDKNHEPYLYTARGVGVMGEDLEEVKQNLFRMLDCLNKPVLMKADFNKNIKVWMDEDTSQDN*
B570J40625_10000226752	F004362	AGGA	MTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNQDGELIEQAVKGLPLELRKMLKARYISHPYASQNQLAHHLRISTKRFETDLHNAKKRLQDQLDKKTKSKDYADMLKVSGEKDNREWDFRNLQQWD*
B570J40625_10000226753	F006502	AGG	MIGLLGKEPKMAEKSEGGLLESDTESCPLSTVDADINKGNKKKAILTANYGARKDGEGKCKACEYYMQGEEMTKCGVGKGMGHCAIFDFVCADENGCQAWEAVGEEEEYEEEE*
B570J40625_10000226763	F046896	AGGA	MNKVDRAKTLLGDEFFQELLQAQKDSFKSYIFSSAEHDVEGREKALVKLKALEEFEASIQSIAHNGEIEKKRVKVF*