NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100002267

Scaffold B570J40625_100002267


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100002267 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35771
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (71.88%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004362Metagenome / Metatranscriptome442Y
F006502Metagenome / Metatranscriptome371Y
F032194Metagenome / Metatranscriptome180N
F046894Metagenome150N
F046896Metagenome / Metatranscriptome150N
F060717Metagenome / Metatranscriptome132N
F073146Metagenome / Metatranscriptome120N
F078379Metagenome116N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10000226729F073146N/AMSEPVSKAVMTVTEVAPFRFAIEIEGSDLSLEVSQIMVKFLNDCLQQIHADQKIH*
B570J40625_10000226731F032194GAGGMRNKHCMDAFYKTLKEVDIPFGQSMICEHFFASGWDAAIDALSLAYQRQFENDGVDTQLIRRDPQEPPADDDKE*
B570J40625_10000226734F060717AGGVKLADVQPDNVCFECGKAWGTHPLKSSENHRSWIDQCDVCLKLTAVVDVSEYGYIKEGWDGEKVV*
B570J40625_10000226736F046894AGGGGGVSKYDSWLEEPYRQMAQADDHQEYVWTTYMKPGKPCDPMDLDNFQEYLADATADYAGAEKWENLREYADKGEWEKFGRAIYFLVHDHIENKLIAEEE*
B570J40625_10000226743F078379GAGMHWNHRVVDFSDENDGNPWVEVCEVFYDKNHEPYLYTARGVGVMGEDLEEVKQNLFRMLDCLNKPVLMKADFNKNIKVWMDEDTSQDN*
B570J40625_10000226752F004362AGGAMTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNQDGELIEQAVKGLPLELRKMLKARYISHPYASQNQLAHHLRISTKRFETDLHNAKKRLQDQLDKKTKSKDYADMLKVSGEKDNREWDFRNLQQWD*
B570J40625_10000226753F006502AGGMIGLLGKEPKMAEKSEGGLLESDTESCPLSTVDADINKGNKKKAILTANYGARKDGEGKCKACEYYMQGEEMTKCGVGKGMGHCAIFDFVCADENGCQAWEAVGEEEEYEEEE*
B570J40625_10000226763F046896AGGAMNKVDRAKTLLGDEFFQELLQAQKDSFKSYIFSSAEHDVEGREKALVKLKALEEFEASIQSIAHNGEIEKKRVKVF*

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