Basic Information | |
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Taxon OID | 3300002835 Open in IMG/M |
Scaffold ID | B570J40625_100002267 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 35771 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (71.88%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004362 | Metagenome / Metatranscriptome | 442 | Y |
F006502 | Metagenome / Metatranscriptome | 371 | Y |
F032194 | Metagenome / Metatranscriptome | 180 | N |
F046894 | Metagenome | 150 | N |
F046896 | Metagenome / Metatranscriptome | 150 | N |
F060717 | Metagenome / Metatranscriptome | 132 | N |
F073146 | Metagenome / Metatranscriptome | 120 | N |
F078379 | Metagenome | 116 | N |
Protein ID | Family | RBS | Sequence |
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B570J40625_10000226729 | F073146 | N/A | MSEPVSKAVMTVTEVAPFRFAIEIEGSDLSLEVSQIMVKFLNDCLQQIHADQKIH* |
B570J40625_10000226731 | F032194 | GAGG | MRNKHCMDAFYKTLKEVDIPFGQSMICEHFFASGWDAAIDALSLAYQRQFENDGVDTQLIRRDPQEPPADDDKE* |
B570J40625_10000226734 | F060717 | AGG | VKLADVQPDNVCFECGKAWGTHPLKSSENHRSWIDQCDVCLKLTAVVDVSEYGYIKEGWDGEKVV* |
B570J40625_10000226736 | F046894 | AGGGGG | VSKYDSWLEEPYRQMAQADDHQEYVWTTYMKPGKPCDPMDLDNFQEYLADATADYAGAEKWENLREYADKGEWEKFGRAIYFLVHDHIENKLIAEEE* |
B570J40625_10000226743 | F078379 | GAG | MHWNHRVVDFSDENDGNPWVEVCEVFYDKNHEPYLYTARGVGVMGEDLEEVKQNLFRMLDCLNKPVLMKADFNKNIKVWMDEDTSQDN* |
B570J40625_10000226752 | F004362 | AGGA | MTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNQDGELIEQAVKGLPLELRKMLKARYISHPYASQNQLAHHLRISTKRFETDLHNAKKRLQDQLDKKTKSKDYADMLKVSGEKDNREWDFRNLQQWD* |
B570J40625_10000226753 | F006502 | AGG | MIGLLGKEPKMAEKSEGGLLESDTESCPLSTVDADINKGNKKKAILTANYGARKDGEGKCKACEYYMQGEEMTKCGVGKGMGHCAIFDFVCADENGCQAWEAVGEEEEYEEEE* |
B570J40625_10000226763 | F046896 | AGGA | MNKVDRAKTLLGDEFFQELLQAQKDSFKSYIFSSAEHDVEGREKALVKLKALEEFEASIQSIAHNGEIEKKRVKVF* |
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