Scaffold B570J40625_100001781

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100001781
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39619
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (91.80%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F018684	Metagenome / Metatranscriptome	233	Y
F026858	Metagenome / Metatranscriptome	196	Y
F041080	Metagenome / Metatranscriptome	160	Y
F091587	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000178115	F001531	GAG	MNWQQIEPWEYVITAVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGNKDAKNLIYRSLRNHALDYCQRWKAKSVGYDVSDIYYYEADVVEALLPAVLRSEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAVKRLVNKLGGFKPFYDNDIMEPTETEPSEDSSYQELGTPQESEQ*
B570J40625_10000178116	F001515	AGGA	MQSLGCWFYESNGTMTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNLSKGFLITVDDLMSATRLYKRAKADELATN*
B570J40625_10000178118	F008808	GGA	MKNKINPCPECGQHFDNVFEATDHLLEDDEEFDPALVLPNGYRLMIGSLLRCMYRYAEQPEQIRTITQDTYMTLFSAETDPGTVLEVIEDMIVGSSMVGIDDELKQLLEDGE*
B570J40625_1000017812	F091587	AGG	MREDRHLTYNPYGGLGSIVVTPRKVHASDRRLGTIGARLTDTQHGKAVRIKRTRTRHAVTTNRPKVERVLPTLDEATQERLARELALAEREQTFRATLPSVHIDAND*
B570J40625_10000178124	F018684	AGGA	MEEWKLQVSYKTPAGDMINVRANTADELSVLLEGVGDYSTQVAAVQRLVVGAYNAAPLGTTPSTPSTTQFTSSAPSQGQGPSLTPPPSAVTPSGTASPTCIHGARIFRQGVSKASGKPYAFWACPTPQGTPDQCKPVN*
B570J40625_1000017813	F026858	GAGG	MTHDNLLLDLTQREVEVIRLALRLQEDTHKRNDFPSLVLEVQGLRSKIADAIIDNARELTKA*
B570J40625_1000017816	F041080	GAGG	MSNDTILNLAEELRIIADEISYNAVDTSSDYPKRGTIVKALPSQTRFKPKSMWVSLGNGTYKHLTGSKGLITTHERLSGYTEVVFEA*