Scaffold B570J40625_100001746

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100001746
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40126
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (89.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F010612	Metagenome	301	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F056346	Metagenome / Metatranscriptome	137	N
F058945	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000174612	F010612	GAG	MTSPKIRTSPMLDEDTPQWEHTVWILAKVRCRTTHINIDTAGDEALDDPSEWHVLEFDKGVKHSQEIVRVK*
B570J40625_10000174618	F015719	AGGAG	MTMYYTEVDGTEPTVSTQVGGIKYTFTNESLTKLIEEKEQLKIELAQLERKFRSARFDVREFFQSRYETDSDEIVCEVDDVNNLLINLETEALTRSWSATVTITATVTGIEAPNAEAAQEILDDAFEVNLTIDGDVWVDDVSVESVHAES*
B570J40625_10000174620	F056346	AGGAG	MSSTEAPISINLKTAGGTQITLRAETADQFADMIAQGIHVITDAVTEVELAVKGTSANKPMSVADIASSFNANIASTESGGEETVEDKWGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAGPRWTGPKVPTELRTKPIFA*
B570J40625_10000174624	F022871	AGGAG	MSEFENAWATDEDFWEFVGDNRKLVGIAISNGQGLDILNALKDIYTTIEKEPESAMRMLTLLGTVIYASSIGEGKQFTDEIQVVSAMEQFDSSMKEMLDEESK*
B570J40625_10000174626	F008296	N/A	MNQEWVQEYDLLVSTLGMEYSRKYSIVEPSDIKQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAALKYCEQEKARKFGYDMVDLYYYDPSVIEAFLPSILADSYEIPSKIQDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNKLAEAKQNILRLRFTTDNYEWNDLAKELNTSADGARMRVSRAINSLIRVLGGWRTYSDTDNLEAKDEEEEDDTRA*
B570J40625_10000174652	F058945	AGGGGG	MECDHKSKVLDWAYELKDGQMNQYVSLYGCTECDATSPKPFITKEEVFQADHSNCDANPCFGCKAKGLQLSTGDANGRASMPMRKWEGELEAYRNARRQGIQPAGTTMNKIVAAEKASENLGRAYNAEKDPNAKHIDKKTAKTINELGA*