Scaffold B570J40625_100001695

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100001695
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40496
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (52.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F021760	Metagenome / Metatranscriptome	217	Y
F029368	Metagenome / Metatranscriptome	188	Y
F054003	Metagenome / Metatranscriptome	140	Y
F071172	Metagenome / Metatranscriptome	122	Y
F085368	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000169526	F085368	N/A	MRFPLAMCSDLETRQIKWISRADQLKNGSRPSPYIHWGVPAATIAAQYAEAHRNDVRQAQWG*
B570J40625_10000169529	F029368	N/A	MRYNPATDRALSIDEIAAQCRGAILKAERQHVEQVADRIYDEVLSFARWENDVLVAA*
B570J40625_10000169534	F071172	N/A	MTLTSQQLDQLVENYAERIVDEMDTKCLMQFVYDTLVESLAGKSEEDVLGEIAYVYDEDVVEELIESVTVQ*
B570J40625_10000169535	F054003	N/A	MTEVLKEYHFDDEQIDFLMRIVRDNAQYEDDEVREWMEELANQIEDQIVNHPTND*
B570J40625_10000169536	F001968	GAG	MFDELWSEIQDAPGEIFDLDIPELRDEKFDVNEYLNANYDY*
B570J40625_10000169537	F021760	N/A	MCGPVFEYSREDFFNDASQEEWDEWESKAAELELPLDYYLAEFV*