Scaffold B570J40625_100001627

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100001627
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41265
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003663	Metagenome / Metatranscriptome	474	Y
F024549	Metagenome / Metatranscriptome	205	Y
F038205	Metagenome / Metatranscriptome	166	Y
F068816	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000162748	F001562	GAGG	MKSQLEKDLDIKDSFDQMLDDSYPDVKIGYSTFTASEILFNCDPIAYQIGLVEHEDYMREEGHID*
B570J40625_10000162751	F038205	AGGA	MGNISEIVGVACDECGGAGFIFFGDEKNYDVESCDCVKETWGI*
B570J40625_10000162752	F024549	N/A	MYRLDTYYDGNLEYTFQFADALQAFEAFAKCYDVGFAKEFATYNLSMPTGKMYTKNFNRIGLVSAK*
B570J40625_10000162757	F003663	AGG	MLATAIGILDATKDSIFDDEIMGLAGELHERRNELSDETFAKYLFMYSTALSSKVADLVTKVCLSKEEMSVLCATIDEMDNLSETILEEDK*
B570J40625_10000162765	F068816	N/A	MSVASATIATFNERNTMPNWVNNTLTIQGPKSEIDSIKERLNRPYKVLHDSWSMETNKMEVTESVYSNPVFAFWNIHSPLEDGITMDEYIQQPTRLGTDTSAPDWFAKEVAHAKTQKDWYSWNTTNWGTKWDVGVGDGDTYPDTELLEYESNGDDNWLVYKYNTAWSP