Scaffold B570J40625_100001509

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100001509
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42771
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (25.40%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F033800	Metagenome	176	N
F036575	Metagenome	169	N
F085159	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000150932	F085159	GGA	MLKVEDKDVSNLIRVNMIEAKKRGNNISKKYNYQWIAPERTGSRKVSEVLAYYDFKCDGKVLNSFGYYNYNHDIEPNKEGTDYKVICNARNPYGRVYSLFKNFYPPIEDKSKEGFRKYLTEDLPKGQMMKMIVQPKWDKPFDYVIRLEHMKDDLMKLPFILDVLTEDQVDILSSHGKEIEDWEQFYDDDMKEIVYRYTEHQFKLWGYEK*
B570J40625_10000150935	F005879	N/A	MFENKIFWKDTFDGEKAQGGIFYRAVDLKKFMELVEANENGNGGEIVGIRFDENNVEFIVKK*
B570J40625_10000150949	F036575	N/A	MGHQSSNQSRSKNGNDFEKVFTERTGIQKMKKKDKPRFTNCHGQEQLIDFDFATEIGGVKVFIDVTTTYRSDRQKQKAYNAVMMKTKLGVDCKFYMVIKSLIENGKPKTVNLVEGMDDVIEIDTFVNMLGVELHNG*
B570J40625_10000150962	F033800	GAG	MVSGIKVINDSYEYDNSIKYNIYLGVIPDELETLRNSDVRDYVEEVSRYVLKGDETLRIVFYNPELG*