Scaffold B570J40625_100001503

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100001503
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42860
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (67.44%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F015730	Metagenome / Metatranscriptome	252	Y
F015988	Metagenome / Metatranscriptome	250	Y
F023106	Metagenome / Metatranscriptome	211	Y
F029721	Metagenome / Metatranscriptome	187	Y
F040535	Metagenome / Metatranscriptome	161	Y
F056558	Metagenome / Metatranscriptome	137	Y
F062758	Metagenome	130	Y
F068492	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10000150316	F062758	AGG	MADILLSNDDLTIFGGPESISLDLDIGPQGDRGSIIIGVLGDPRDANVASTIVQDTQALDIAIDYQPASTTYKTVFQKVSSGGSLQWTPLVSLKTNYYSSIKDVTAVNGTLTVPPINVAEIYGSSGITSATSQVFNVQYSISSSDSSGPLATNLIIKDLITSQGFLALPLEIKGVEYIDNAWQPMAGPKRVHLFITVV*
B570J40625_10000150330	F056558	GAGG	MMGFLENLENAWDDNLSLESKPIPETDAMGREKFWEDLGRPEYPNLAAKIFSETCCQDCSCKNG*
B570J40625_10000150332	F040535	AGG	MLTLNYTIEKDGIELSEINKLMINERQINDLMDSLVAHGYDVLSMEVK*
B570J40625_10000150333	F015730	N/A	MLTEKTLNKIVYEYQHGGVQNYHPEISLSERMALIKYLAKMPSKCAPECEASHTN*
B570J40625_10000150339	F029721	AGGAG	MRSYSIEDLLVGQFYRPTSLARRYQGGEINYATKRDDIWVGENFQAYAIRFNGHKWATIAVRVSD*
B570J40625_10000150356	F001507	N/A	MTQTYKPYTIDELVTEIYEDNLSHFEFEENMGGEPCDCYLHNTMNTIMKYWGE*
B570J40625_10000150357	F015988	GGGGG	MNQLIEYIKIHIISLEQDLEQISNEMEALDPASKDYTELDFEYNHMSGQLLSARHILSVADGILEV*
B570J40625_10000150358	F068492	GAG	MNTTQLEPRLQKLIDLGESGTDILHGELKNLMYEAEKELIEAQRIEEDNDYSDAMESMERKYWEGQLDAMSHVYGLTYALAFAISERRSKQSNE*
B570J40625_10000150363	F023106	AGGAGG	MRIRRILTEEEKVAKKIGNEIADLRVDLELVGQYMAQSQPYVVYNRLQVIAEAAKETKEGTNYARNNF*