Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100001079 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100001079 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49269
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (22.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

49269

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (22.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001970	Metagenome / Metatranscriptome	609	Y
F006260	Metagenome / Metatranscriptome	377	Y
F027827	Metagenome / Metatranscriptome	193	Y
F031030	Metagenome / Metatranscriptome	183	N
F068836	Metagenome	124	N
F071238	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000010791	F001970	N/A	MKKFFTLTIFALLLAGCTTKIVPGQQVSTAQDAVAKQEKKIDQTYDDLVKNDKSKRVQTSVLAQGIQYSLQQVTNAPIQVETAKNLNERVISIVGSPHLDEIKRIKATIDLLNSSLAEERKKGEELLGQRDTVIDKLQKEKSELKDKYDDQLWQMTDKAKEVAKESDAKQATIDSMSGMFGLNAVFWGLKKFFFSCLTAIIIFVVVFALLRI
B570J40625_10000107913	F027827	N/A	MAYPIINLSGSLEIQQAANTNQLEILQAVDDPVAKTVKTLVKISTNPYAHNWYTVWQGDAYDAAGQWTDDELAQAVTAIVVAEYPPALLRS*
B570J40625_10000107918	F068836	N/A	MNSFEIPTSLNDPIFQSLVRKKQNGEDTNLPPIQEFAQEDINELESFCRKYGILGFNCGRMSPKSALRMLKSRMGVPIEEATPTKIKSLLKG*
B570J40625_10000107921	F071238	N/A	MFKPIKENDLGDRMYTGQSYIQGGGGSGVDTFSSPDVSQTPKSFSYVPNIAGSQSNITAVPPVDYDNKPMVDPAQFDKEVEEIKTKVTPDEVIAGIQYELKKMVYKRKDLAKILVVANLKRDPKYYSKLHMLNIDDDDIEPAQAPFIPTQNPYQSEPVLQYQDYRTDGEKAIAEIMKEMAQKKHEKRYPKH*
B570J40625_10000107934	F031030	AGGA	MGMFDDIVCKYPLPLPEDPKGYCNNKYQTKDFDNAMDLYEIREDGTLWLHCAEYEYTDGNPNAKSLIEKLPTRKEIKTWWQQIFPITDTVRLYAYDSDTNETYDYWIEYDVTFVDGKVTKAKLLEFTATDNSERKERHRKDVEYWTNRQKFEYTLFYRLIGKPYNKTITFICRSIHKSATWVTYKIWKVERFLKI*
B570J40625_10000107935	F006260	N/A	MEKELTIKDKVNNPIIIQHDDLKFDGKTITIPSYYVNIILDYIKDYEVDGVPQVDIDDYISFRDFLYDIQEHKNKGN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100001079

Overview

Ecosystem & Geography

Associated Families

Sequences